PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G531600.1.p
Common NamePpDAM5
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26101.7 Da    PI: 4.5668
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G531600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.25e-241659851
                        HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         rqvtfskRr g++KKA ELSvLC+ evav+ifs tgkl++yss
  Prupe.1G531600.1.p 16 ARQVTFSKRRRGLFKKAAELSVLCESEVAVVIFSATGKLFDYSS 59
                        69****************************************96 PP
2K-box47.57.9e-1781169997
               K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                         ++e + +  ++++ kL ke+e+  r++R+++GedLe L+l eL +Leq +e sl ++ ++K+el++++i  l +k  el e+n++Lr+ 
  Prupe.1G531600.1.p  81 NQEIELQLENENHIKLSKELEEKSRQLRQMKGEDLEGLNLDELLKLEQLVEASLGRVMETKEELIKSEIMALERKGTELVEANNQLRQT 169
                         55667777888999*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.011161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-27374IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-23323IPR002100Transcription factor, MADS-box
CDDcd002651.52E-33369No hitNo description
PfamPF003199.8E-221657IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-233859IPR002100Transcription factor, MADS-box
PfamPF014864.2E-1486169IPR002487Transcription factor, K-box
PROSITE profilePS5129712.44886179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MMRNKIKIKK IDYLPARQVT FSKRRRGLFK KAAELSVLCE SEVAVVIFSA TGKLFDYSSS  60
STKDVIERYN ADINGVEKLN NQEIELQLEN ENHIKLSKEL EEKSRQLRQM KGEDLEGLNL  120
DELLKLEQLV EASLGRVMET KEELIKSEIM ALERKGTELV EANNQLRQTM VMLSGGNTGP  180
ALMDPERLNN NIEGGGEEEG MSAESAISTT CNSAVSLSLE DDSSDEVTLS LKLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-16183192MEF2C
5f28_B1e-16183192MEF2C
5f28_C1e-16183192MEF2C
5f28_D1e-16183192MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.51820.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G531600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8632510.0DQ863251.1 Prunus persica dam5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007223866.21e-166MADS-box protein JOINTLESS isoform X2
SwissprotQ9FUY67e-66JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA6XMZ61e-165A6XMZ6_PRUPE; Dam5
TrEMBLM5Y0B51e-165M5Y0B5_PRUPE; Uncharacterized protein
STRINGEMJ250651e-166(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15110414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-43MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]