PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G531700.1.p
Common NamePRUPE_ppa010714mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 26532.3 Da    PI: 4.818
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G531700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.91.3e-231659851
                        HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         rqvtfskRr g++KKA ELSvLC+ evaviifs t+kl++yss
  Prupe.1G531700.1.p 16 ARQVTFSKRRRGLFKKAAELSVLCESEVAVIIFSATDKLFDYSS 59
                        69****************************************96 PP
2K-box485.3e-17861711499
               K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                          +  ++++ kL ke+e+  r +R+++GedL+ L++ eL +Leq +e sl ++ ++K+el++++i  l kk  el e+n++Lr+k++
  Prupe.1G531700.1.p  86 LQLENENHIKLSKELEEKSRRLRQMKGEDLQGLNMDELLKLEQLVEASLGRVIETKEELIMSEIMALEKKGAELVEANNQLRQKMA 171
                         3445667789999**9999****************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.366161IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-22323IPR002100Transcription factor, MADS-box
CDDcd002652.54E-33377No hitNo description
SuperFamilySSF554557.59E-27374IPR002100Transcription factor, MADS-box
PfamPF003193.7E-211657IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-223859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.13986176IPR002487Transcription factor, K-box
PfamPF014869.2E-1590170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MMREKIKIKK IDYLPARQVT FSKRRRGLFK KAAELSVLCE SEVAVIIFSA TDKLFDYSSS  60
STEDVIERYK AHTNDLEKSN KQFLELQLEN ENHIKLSKEL EEKSRRLRQM KGEDLQGLNM  120
DELLKLEQLV EASLGRVIET KEELIMSEIM ALEKKGAELV EANNQLRQKM AMLSGGNTGP  180
AFVEPETLIT NVGGGGEEDG MSSESAIIAT STSCNSAHSL SLEDDCSDVT LSLKLGLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-17192193MEF2C
5f28_B5e-17192193MEF2C
5f28_C5e-17192193MEF2C
5f28_D5e-17192193MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G531700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8632520.0DQ863252.1 Prunus persica dam6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007227562.11e-172MADS-box protein JOINTLESS
SwissprotQ9FUY63e-69JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLM5XT891e-171M5XT89_PRUPE; Uncharacterized protein
STRINGEMJ287611e-172(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15110414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.11e-64AGAMOUS-like 24
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]