PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G534400.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 355aa    MW: 38460.6 Da    PI: 4.5639
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G534400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.74.9e-16208244135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Prupe.1G534400.1.p 208 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 244
                         *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.94268103IPR010399Tify domain
SMARTSM009794.2E-768103IPR010399Tify domain
PfamPF062003.5E-1071102IPR010399Tify domain
PfamPF062031.0E-14136177IPR010402CCT domain
PROSITE profilePS5101712.58136178IPR010402CCT domain
PROSITE profilePS501148.524202250IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-8202255IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.71E-11203252No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14206249IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.74E-16207251No hitNo description
PfamPF003206.9E-14208244IPR000679Zinc finger, GATA-type
PROSITE patternPS003440208235IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MAAVNPQPLQ ARPFEEHGRG PIPIEDDEAE YEDGGDDGME DMEEVHVNSV SVAERGGVGG  60
GGGGGVVMAS RTSELTLSFE GEVYVFPAVT PEKVQAVLLL LGGRDVPTGV PTVEVSYDQN  120
TRGVADTPKR SNLSRRIASL VRFREKRKER CFDKKIRYTV RKEVAQRMLR KNGQFASLKQ  180
NSGDSGWDSA QSGLQDGTSR PETVLRRCQH CGVSENNTPA MRRGPAGPRT LCNACGLMWA  240
NKGTLRDLSK GGRNLTMDHI EPGTPIEVKP LLVEGEFSGN QDEHGTLEGS SKTVIERSND  300
ASVNLDEQDL HETAEDLTNS LPMGIVSSAN DEQEPLVELT NPSDTDLEIP TNFD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130DTPKRS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G534400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007227470.20.0GATA transcription factor 24
SwissprotQ8GXL71e-73GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A251RHF60.0A0A251RHF6_PRUPE; Uncharacterized protein
STRINGXP_008219237.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-75ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]