PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G551600.3.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 234aa    MW: 27039.5 Da    PI: 8.2023
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G551600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-052448123
                        EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                        ++C+   Cgk+F+  s L++H  +H
  Prupe.1G551600.3.p 24 HVCKeiGCGKVFRFASRLRKHEDSH 48
                        79*******************9888 PP
2zf-C2H216.22.9e-05115139223
                         EET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                         kC    C  +F++ksnL++H +  H
  Prupe.1G551600.3.p 115 KCDykGCLHTFTTKSNLTKHVKAvH 139
                         688889**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.5E-71948IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.2012453IPR007087Zinc finger, C2H2
SMARTSM003550.0312448IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802648IPR007087Zinc finger, C2H2
SMARTSM003558.65681IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805881IPR007087Zinc finger, C2H2
SMARTSM003552684105IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.98E-799152No hitNo description
PROSITE profilePS5015711.759114144IPR007087Zinc finger, C2H2
SMARTSM003550.003114139IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-6115139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280116139IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-5140168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.6145171IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280147171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MRRHVNELHS EDSPSTNGGA QKQHVCKEIG CGKVFRFASR LRKHEDSHVK LDTVEAFCSE  60
PGCMKHFTNE QCLQAHIHSC HQHTTCEICG TKQLRNNIKR HLLTHEDKHS IERIKCDYKG  120
CLHTFTTKSN LTKHVKAVHL EHKPFVCSFS GCGLRFAYKH VRDNHEKTGC HVYTQGDFEE  180
ADEQFRSRPR GGRKRECPDI PMLVRKRVTP PNQLGQECEY ISWLHSQEDN DEQ*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Both isoforms 1 and 2 transcripts are expressed in seedlings and both TFIIIA and TFIIIA-C are present at similar ratios in 10-day-old seedlings (at protein level). In correlation with the reorganization of 5S rDNA chromatin to a mature state, full-length isoform 1 protein TFIIIA with transcriptional activity accumulates and permits de novo transcription of 5S rRNA. Isoforms 1 and 2 transcripts accumulate in various tissues of the reproductive phase, including flowers and siliques, but only isoform 2 is present in mature seeds. In flowers, both TFIIIA and TFIIIA-C are present at similar ratios (at protein level). Very low amounts of TFIIIA are found in extracts from fresh siliques compared to TFIIIA-C. The amount of full-length TFIIIA protein progressively increases from fresh siliques to seeds concomitant with lower proportions of the shorter TFIIIA-C protein (at protein level) thus leading to 5S rRNA accumulation in the seed. {ECO:0000269|PubMed:22353599}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, flowers, siliques and seeds. {ECO:0000269|PubMed:22353599}.
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G551600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020410711.11e-173transcription factor IIIA
SwissprotQ84MZ41e-89TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A251RIC61e-173A0A251RIC6_PRUPE; Uncharacterized protein
TrEMBLA0A251RIW51e-171A0A251RIW5_PRUPE; Uncharacterized protein
STRINGXP_008219031.11e-162(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.18e-93transcription factor IIIA