PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G551600.4.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 315aa    MW: 36420.2 Da    PI: 8.5028
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G551600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-053660123
                        EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                        y C+  dC+ s++rk++L+rH+  H
  Prupe.1G551600.4.p 36 YICSvdDCHSSYRRKDHLNRHLLQH 60
                        89*******************9887 PP
2zf-C2H214.20.000136590123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                        +kCp  +C++ F  + n++rH +  H
  Prupe.1G551600.4.p 65 FKCPieNCNREFGFQGNMRRHVNElH 90
                        89*******************99888 PP
3zf-C2H215.93.8e-05105129123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         ++C+   Cgk+F+  s L++H  +H
  Prupe.1G551600.4.p 105 HVCKeiGCGKVFRFASRLRKHEDSH 129
                         79*******************9888 PP
4zf-C2H215.74.3e-05196220223
                         EET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                         kC    C  +F++ksnL++H +  H
  Prupe.1G551600.4.p 196 KCDykGCLHTFTTKSNLTKHVKAvH 220
                         688889**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-93262IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.67E-63462No hitNo description
SMARTSM003550.00923660IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.663665IPR007087Zinc finger, C2H2
PROSITE patternPS0002803860IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.5E-56386IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.66E-66391No hitNo description
PROSITE profilePS5015711.7186595IPR007087Zinc finger, C2H2
SMARTSM003550.0146590IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806790IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.9E-7100129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.201105134IPR007087Zinc finger, C2H2
SMARTSM003550.031105129IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280107129IPR007087Zinc finger, C2H2
SMARTSM003558.6137162IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280139162IPR007087Zinc finger, C2H2
SMARTSM0035526165186IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.98E-6180232No hitNo description
PROSITE profilePS5015711.759195225IPR007087Zinc finger, C2H2
SMARTSM003550.003195220IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-6196220IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280197220IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.0E-5221249IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.6226252IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280228252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MRDGYDLNGL VPGGRPPVKL HQVNLNHALF GLRRPYICSV DDCHSSYRRK DHLNRHLLQH  60
QGKLFKCPIE NCNREFGFQG NMRRHVNELH SEDSPSTNGG AQKQHVCKEI GCGKVFRFAS  120
RLRKHEDSHV KLDTVEAFCS EPGCMKHFTN EQCLQAHIHS CHQHTTCEIC GTKQLRNNIK  180
RHLLTHEDKH SIERIKCDYK GCLHTFTTKS NLTKHVKAVH LEHKPFVCSF SGCGLRFAYK  240
HVRDNHEKTG CHVYTQGDFE EADEQFRSRP RGGRKRECPD IPMLVRKRVT PPNQLGQECE  300
YISWLHSQED NDEQ*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Both isoforms 1 and 2 transcripts are expressed in seedlings and both TFIIIA and TFIIIA-C are present at similar ratios in 10-day-old seedlings (at protein level). In correlation with the reorganization of 5S rDNA chromatin to a mature state, full-length isoform 1 protein TFIIIA with transcriptional activity accumulates and permits de novo transcription of 5S rRNA. Isoforms 1 and 2 transcripts accumulate in various tissues of the reproductive phase, including flowers and siliques, but only isoform 2 is present in mature seeds. In flowers, both TFIIIA and TFIIIA-C are present at similar ratios (at protein level). Very low amounts of TFIIIA are found in extracts from fresh siliques compared to TFIIIA-C. The amount of full-length TFIIIA protein progressively increases from fresh siliques to seeds concomitant with lower proportions of the shorter TFIIIA-C protein (at protein level) thus leading to 5S rRNA accumulation in the seed. {ECO:0000269|PubMed:22353599}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, flowers, siliques and seeds. {ECO:0000269|PubMed:22353599}.
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G551600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020410711.10.0transcription factor IIIA
SwissprotQ84MZ41e-113TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A251RI770.0A0A251RI77_PRUPE; Uncharacterized protein
STRINGXP_008219031.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-115transcription factor IIIA