PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G554100.1.p
Common NamePRUPE_ppa014627mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 178aa    MW: 20380.5 Da    PI: 8.2151
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G554100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.38.4e-131160351
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE.-TTSEEEEEE- CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif.sstgklyeyss 51
                        i+ + nr vtf kR++ ++ K  E+ +LC++ ++ +++  s+ k+  ++s
  Prupe.1G554100.1.p 11 ISHEPNRRVTFKKRKASLFRKLTEITTLCGIIACAVVYdTSDSKMDAWPS 60
                        88999*************************98875555278889999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.591151IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-10160IPR002100Transcription factor, MADS-box
CDDcd002662.46E-21285No hitNo description
SuperFamilySSF554551.19E-18293IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-5323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-121156IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MGKNKIKHEL ISHEPNRRVT FKKRKASLFR KLTEITTLCG IIACAVVYDT SDSKMDAWPS  60
PQEAFYVLEN FKKLPEQRRG QFMMDQKAFL KKNISRLNGQ LERARFKNQA LDAELLLIEY  120
LEGKHLSDSS RLGSLLALED QLAKKISFIT NRIEFMEVLE PNEVDAEINS DEMGDQG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G554100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007226134.21e-128agamous-like MADS-box protein AGL80
TrEMBLM5XZI51e-128M5XZI5_PRUPE; MADS-box protein 29
STRINGEMJ273331e-129(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144641115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.29e-28AGAMOUS-like 87