PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G554600.9.p
Common NamePRUPE_ppa011017mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 227aa    MW: 24352.1 Da    PI: 5.443
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G554600.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.4e-13162207655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L++l+P+     +k  + a++L +AveY+k Lq
  Prupe.1G554600.9.p 162 SIAERVRRTRISDRIRKLQDLVPNM----DKQTNTADMLDEAVEYVKFLQ 207
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.958156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-17159221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.29E-13160211No hitNo description
Gene3DG3DSA:4.10.280.103.0E-17161219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-10162207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MQRAAGGSSS GGGEVSRGGG LGRFCSAPAT WLEALLEEEE EDPLKPTQCL TELLAENTGA  60
TSVGFGSATV DPVSYEAAAA AGFLSRQNSS PAEFLGSSND GSEGYFSGFG IPAHLDFVSL  120
SPNSSSPSAN KRVREKLEEG GLEDAVPCRV RAKRGCATHP RSIAERVRRT RISDRIRKLQ  180
DLVPNMDKQT NTADMLDEAV EYVKFLQKQI QELSEHQRRC KCIAKE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G554600.9.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007227574.11e-134transcription factor bHLH80
RefseqXP_020421630.11e-134transcription factor bHLH80
SwissprotQ9C8P85e-74BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A251RI741e-165A0A251RI74_PRUPE; Uncharacterized protein
STRINGEMJ287731e-133(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.12e-60bHLH family protein