PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G560100.1.p
Common NamePRUPE_ppa019508mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 211aa    MW: 23995.7 Da    PI: 4.7616
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G560100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.31.8e-3781311128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrF+Ptdeelvv++L++k++  +++  +vi+++++y ++Pw+L+ k+  e ++wyf+s+r         +nr+t++gyWka g +++
  Prupe.1G560100.1.p   8 LPPGFRFDPTDEELVVHFLQRKAALLPFHP-DVIPDLHLYPYDPWELDGKALREGNKWYFYSRRT--------QNRVTSNGYWKALGVEEP 89 
                         79*************************999.99**************977677889******984........58**************** PP

                 NAM  92 vlsk....kgelvglkktLvfykgrapk.gektdWvmheyrl 128
                         v+++    ++++vg+k+ L+fy g+ap+ g kt+W+mheyrl
  Prupe.1G560100.1.p  90 VITRsscnSTHKVGMKRYLAFYVGEAPNsGIKTNWIMHEYRL 131
                         **9988877888**********997765289*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-455176IPR003441NAC domain
PROSITE profilePS5100545.1818177IPR003441NAC domain
PfamPF023652.6E-249131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGDDQFKLPP GFRFDPTDEE LVVHFLQRKA ALLPFHPDVI PDLHLYPYDP WELDGKALRE  60
GNKWYFYSRR TQNRVTSNGY WKALGVEEPV ITRSSCNSTH KVGMKRYLAF YVGEAPNSGI  120
KTNWIMHEYR LSPLSAGDGA SSSSSSSTTT RSSKRRGHLK TVNNEFSEYV LCRVYERDED  180
DDDDDDGTVL SCLDEVFLSL DDLDEISLPI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-38517814166NO APICAL MERISTEM PROTEIN
1ut4_B6e-38517814166NO APICAL MERISTEM PROTEIN
1ut7_A6e-38517814166NO APICAL MERISTEM PROTEIN
1ut7_B6e-38517814166NO APICAL MERISTEM PROTEIN
3swm_A6e-38517817169NAC domain-containing protein 19
3swm_B6e-38517817169NAC domain-containing protein 19
3swm_C6e-38517817169NAC domain-containing protein 19
3swm_D6e-38517817169NAC domain-containing protein 19
3swp_A6e-38517817169NAC domain-containing protein 19
3swp_B6e-38517817169NAC domain-containing protein 19
3swp_C6e-38517817169NAC domain-containing protein 19
3swp_D6e-38517817169NAC domain-containing protein 19
4dul_A6e-38517814166NAC domain-containing protein 19
4dul_B6e-38517814166NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G560100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020421993.11e-156NAC domain-containing protein 104 isoform X1
RefseqXP_020421998.11e-156NAC domain-containing protein 104 isoform X1
SwissprotQ8GWK69e-75NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A251RIQ01e-155A0A251RIQ0_PRUPE; Uncharacterized protein
STRINGEMJ254931e-130(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-71xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]