PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G576100.2.p

Common Name

PRUPE_ppa007287mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 345aa MW: 39404.7 Da PI: 6.1679

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G576100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00046	79	101	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H H Prupe.1G576100.2.p 79 CSyeGCGKTFIDAGALRKHSHIH 101 77779**************7766 PP
2	zf-C2H2	22.3	3.5e-07	106	130	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk Fs nL++H++tH Prupe.1G576100.2.p 106 YVCHyeGCGKAFSLDFNLRSHMKTH 130 9***********************9 PP
3	zf-C2H2	17.7	1e-05	136	160	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dCgk++ + + Lk+Hi++H Prupe.1G576100.2.p 136 HICPypDCGKRYAHEYKLKNHISSH 160 679999******************6 PP
4	zf-C2H2	14	0.00015	200	225	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y Cp C k + + + Lk H+r+ H Prupe.1G576100.2.p 200 YACPyeGCEKAYIHEYKLKLHLRReH 225 89**********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	8.4E-14	72	102	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0032	77	101	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.783	77	106	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	79	101	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.53E-9	80	130	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.8E-14	103	129	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	7.2E-4	106	130	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.778	106	135	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	108	130	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.38E-8	116	162	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.9E-8	130	162	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0045	136	160	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.078	136	165	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	138	161	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.3E-9	195	223	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.68E-5	195	223	No hit	No description
SMART	SM00355	0.0089	200	225	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.972	200	230	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	202	225	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
METQFHHNYF ERRPIFRSKT PAVKWFKEWV PQDVVATGGK CSLLKWVTAD TIKALKEKSK 60 ETVAPEPEPE PTTEVLFLCS YEGCGKTFID AGALRKHSHI HGERQYVCHY EGCGKAFSLD 120 FNLRSHMKTH SQENYHICPY PDCGKRYAHE YKLKNHISSH HEKSVMVDVP KYATPPAEKQ 180 IKTPKPPAGG YGSASSDRPY ACPYEGCEKA YIHEYKLKLH LRREHPGHMS DENAENAPNN 240 ADNEMDEASD QDAYAGKRVN GKSQKQNRPK PNLKFPPAKV VQRKGATPSP ATMNTMKKPW 300 PVKDEVVYEE EDSEETEEDR DNVEDGWRYG ENNDDDDEET EDED*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

METQFHHNYF ERRPIFRSKT PAVKWFKEWV PQDVVATGGK CSLLKWVTAD TIKALKEKSK  60
ETVAPEPEPE PTTEVLFLCS YEGCGKTFID AGALRKHSHI HGERQYVCHY EGCGKAFSLD  120
FNLRSHMKTH SQENYHICPY PDCGKRYAHE YKLKNHISSH HEKSVMVDVP KYATPPAEKQ  180
IKTPKPPAGG YGSASSDRPY ACPYEGCEKA YIHEYKLKLH LRREHPGHMS DENAENAPNN  240
ADNEMDEASD QDAYAGKRVN GKSQKQNRPK PNLKFPPAKV VQRKGATPSP ATMNTMKKPW  300
PVKDEVVYEE EDSEETEEDR DNVEDGWRYG ENNDDDDEET EDED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ubd_C	1e-19	79	221	8	117	PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppe.18587	0.0	fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Rapidly induced following seed germination, especially in tender cotyledons. {ECO:0000269\|PubMed:26961720}.
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers, to a lower extent in seedlings, stems and leaves, and, at low levels, in roots and senescent leaves. {ECO:0000269\|PubMed:26961720}.

Functional Description ? help Back to Top
Source	Description
UniProt	Dual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269\|PubMed:22508367, ECO:0000269\|PubMed:24451981, ECO:0000269\|PubMed:26961720}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G576100.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269\|PubMed:26961720}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007223300.1	0.0	uncharacterized zinc finger protein At4g06634
Swissprot	Q2V3L3	1e-137	YY1_ARATH; Zinc finger transcription factor YY1
TrEMBL	A0A251RJN1	0.0	A0A251RJN1_PRUPE; Uncharacterized protein
STRING	EMJ24499	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	1e-125	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Prupe.1G576100.2.p
Entrez Gene	18790789

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315] Li T,Wu XY,Li H,Song JH,Liu JY A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network. Mol Plant, 2016. 9(5): p. 650-661 [PMID:26961720] Wu XY,Li T A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response. Front Plant Sci, 2017. 8: p. 323 [PMID:28348572]