PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G585000.1.p
Common NamePRUPE_ppa023225mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 932aa    MW: 109746 Da    PI: 6.8817
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G585000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-06233252625
                         -SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                         C+f+++tG C++G rC++ H
  Prupe.1G585000.1.p 233 CPFHLKTGACRFGQRCSRVH 252
                         ******************99 PP
2zf-CCCH24.45e-08362389126
                         --S---SGGGGTS..--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                         +k ++C  ++++   tC++G  C+F+H+
  Prupe.1G585000.1.p 362 WKVAICGEYMKSRykTCSHGTACNFIHC 389
                         899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.23227255IPR000571Zinc finger, CCCH-type
SMARTSM003563.4228254IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-4232252IPR000571Zinc finger, CCCH-type
PRINTSPR018488.3E-38233252IPR009145U2 auxiliary factor small subunit
PRINTSPR018488.3E-38252272IPR009145U2 auxiliary factor small subunit
Gene3DG3DSA:3.30.70.3301.0E-25259357IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS501029.9259359IPR000504RNA recognition motif domain
CDDcd125402.95E-46260358No hitNo description
SMARTSM003614.7E-6279355IPR003954RNA recognition motif domain, eukaryote
PRINTSPR018488.3E-38288303IPR009145U2 auxiliary factor small subunit
SuperFamilySSF549283.74E-16291360IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018488.3E-38316338IPR009145U2 auxiliary factor small subunit
PRINTSPR018488.3E-38343367IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010310.465361391IPR000571Zinc finger, CCCH-type
SMARTSM003560.12361390IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-5362389IPR000571Zinc finger, CCCH-type
PRINTSPR018488.3E-38381393IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 932 aa     Download sequence    Send to blast
MMDLADPVAK EGEADAEPKM ERLAEEKGTN RKEKRKAMKK MKRKQTRKEM ALKEREEEEA  60
ILNDPQELMK IKLMEQEEAE RSERERKLFE ERERAWIEAM EIKRKKQIEE EEEEEERRMK  120
ALEEEELSRK QQVENENDSN EVDDWDYIEE GPAEIIWQGN EIIVKKKRIK VPKRNTDQQS  180
RKEDCDRPTS NPLPPQSEAF SDYKNSSMSA QQLIENVAQQ VPHFGTEQDK AHCPFHLKTG  240
ACRFGQRCSR VHFYPDKSST LLIKNMYNGP GLAWEQDEVL EHTDEEVERC YEEFYEDVHT  300
EFLKFGEIIN FKVCRNGAFH LRGNVYIHYK SLDSAVLAHQ SINGRYFAGK QISCEFINVT  360
RWKVAICGEY MKSRYKTCSH GTACNFIHCF RNPGGDYEWG DSDRPAPKYW VRKMVALFGY  420
SDADEKQMVE ENFGRLRNFS KMTMADSERY GLRRSRSRGR DYSSFIGSGR RYDSEDYVLE  480
DAERQRHTGD DRHRGKTLDE DRCEENKNLK DYHCRKSRRS DTEFDRQLLD REEDRDRHHG  540
HTRKSSRQQN RDHKNKTYET ESDGDLSDRA RNRVAQHGCT RESSSQQRKG EFLDEYGDWQ  600
NKNHEVDRDW SDRDKDIDAY QDNRKSSGHK RKVGCPDNHN DSKNRAHDMD EEWSDSNSKG  660
GKHHSRRKRF GHISKASEFS NHRERTTRSC SYELSDDLLE NDAERNLSHA RKRSKRLDEV  720
SDISDEGRVP TQNLEHRHDR LSLEMREAEA LVKKLKSDGT HESSSLGQDG ERYRSHDFDI  780
RCISDVHMDK QDRWEPEDGS VEIFHNSKTK AGSSESYESG RPGPYNVRGE SSDFDSEDKV  840
SQEDQYESDK VAHSKHRKSR RKSTHDNRKR DSENRSLCSS QSSHRRHSNR LEATDSSEDN  900
NESGRKHNQK HHADHRSRDH KRDHKSRRLA T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A1e-292243889167Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G585000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007226613.20.0zinc finger CCCH domain-containing protein 5
SwissprotQ9SY740.0C3H5_ARATH; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A251RK360.0A0A251RK36_PRUPE; Uncharacterized protein
STRINGEMJ278120.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47132433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-146C3H family protein
Publications ? help Back to Top
  1. Lorković ZJ,Wieczorek Kirk DA,Lambermon MH,Filipowicz W
    Pre-mRNA splicing in higher plants.
    Trends Plant Sci., 2000. 5(4): p. 160-7
    [PMID:10740297]
  2. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]