PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G011700.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 368aa    MW: 40744.8 Da    PI: 7.535
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G011700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-06326226
                        -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                        k++lC+ffa  G C  G+ C F+H+
  Prupe.2G011700.2.p  3 KRVLCKFFAH-GACLKGEHCEFSHD 26
                        99****6666.*************5 PP
2zf-CCCH22.61.9e-073454526
                        --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                        +C f+++ G C +G+rC++ H+
  Prupe.2G011700.2.p 34 ICTFYQK-GACAFGSRCRYEHV 54
                        7******.***********997 PP
3zf-CCCH19.22.1e-06148170326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         +++C+ fa+ G C++G++C+ +Hg
  Prupe.2G011700.2.p 148 HAICS-FAAAGNCPRGEKCPHIHG 170
                         57899.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.4E-5127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.671128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-7326IPR000571Zinc finger, CCCH-type
PfamPF156632.7E-8762No hitNo description
PROSITE profilePS5010314.1362956IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-53253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.784145172IPR000571Zinc finger, CCCH-type
SMARTSM003560.0035146171IPR000571Zinc finger, CCCH-type
SuperFamilySSF578504.89E-14204278No hitNo description
Gene3DG3DSA:3.30.40.101.8E-10207273IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF136391.9E-7213272IPR001841Zinc finger, RING-type
CDDcd001627.73E-4213273No hitNo description
PROSITE profilePS5008912.445214272IPR001841Zinc finger, RING-type
SMARTSM001841.9E-7214271IPR001841Zinc finger, RING-type
PROSITE patternPS005180238247IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.13301329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507301330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEFSHDWKAT PNNICTFYQK GACAFGSRCR YEHVKASRAQ  60
SSGSSSSPNS RQSLAVDSLS LSHPSRTSSS GVALSPGILS ELSASSSPFL PPSKPAWNGS  120
LDDDDYSDNG DNDDDGAGVT RSTRPEDHAI CSFAAAGNCP RGEKCPHIHG DICPSCGKHC  180
LHPYRPMERE EHMKTCEEKQ KQLEALKRSQ EIECSVCLER VLSKPTVAER KFGILSECDH  240
PFCVSCIRNW RSSSPTSGMD VNSALRACPI CRKLSYFVIP SVIWYNTKEE KQEIIDSYKS  300
RLRSIDCKHF DFGNGNCPFG TSCFYKHAYR DGRLEEVALR HLGNEDGQTV IATNIRLSDF  360
LADLHIR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.11320.0fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G011700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020413326.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X2
SwissprotE0X9N41e-173C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A251Q9780.0A0A251Q978_PRUPE; Uncharacterized protein
STRINGEMJ192850.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-127C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]