PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G028700.10.p
Common NamePRUPE_ppa005439mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 462aa    MW: 52324.3 Da    PI: 6.2812
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G028700.10.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.25.5e-137444561374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL++cA++v+sg+ e+a+  L ++s+laspdgd+mqR+aayf eALa r+++ +++lykal++++ +  ++see+ + +lf +++P+
  Prupe.2G028700.10.p  44 LIQLLYSCANHVASGSIENANIWLDHISQLASPDGDTMQRIAAYFNEALADRMLKAWPGLYKALNSTKIT--SVSEEILVKRLFCDLCPF 131
                          689*************************************************************999998..5***************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          lk++++++NqaI+ea+ege++vHiiD+   +++QW+ L+q+L++Rpegpp+lRiTg+++    +ke l ++ +rL++ A +l++pf+fn+
  Prupe.2G028700.10.p 132 LKVAYVVTNQAIVEAMEGEKMVHIIDLHSCEPAQWIYLIQTLNARPEGPPHLRITGIHE----QKEVLDQMFHRLTEEAGNLNIPFQFNP 217
                          ***********************************************************....9************************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrll.................................................desvsle 221
                           ++++le+l++e+Lrvk+gEalaV++vlqlh+ll                                                    +s  
  Prupe.2G028700.10.p 218 -IVSKLENLDIESLRVKTGEALAVCSVLQLHSLLaadddlrrksplasknlqkvlhmnkltlgewlekdpisaynlspdsalsP--LSGG 304
                          .7999*************************************************************************888552..3333 PP

                 GRAS 222 s.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhe 310
                          s +  ++L  +++lsPk++v++eqe++hn++++++r++eal++y alfd+le+++pr   er+kvE++l+g+ei+n++aceg+er+erhe
  Prupe.2G028700.10.p 305 SpKMGSFLTSLWGLSPKLMVITEQESNHNGHTLMDRIMEALNFYGALFDCLESTVPRSPMERQKVEKMLFGEEIKNIIACEGTERTERHE 394
                          344778************************************************************************************ PP

                 GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          +lekW  rle aGF+ vpls++ + qa++ l+ ++  g++++ee+g+lv++W+drpL+s+SaWr
  Prupe.2G028700.10.p 395 KLEKWILRLELAGFGRVPLSYHGMLQARRQLQGYE--GFKIKEENGCLVICWHDRPLFSISAWR 456
                          **********************************9..**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.51418438IPR005202Transcription factor GRAS
PfamPF035141.9E-13444456IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MAQEDGSPVT SSPLQFFPWL SPGMGSPYPT WLRELKSEER GLYLIQLLYS CANHVASGSI  60
ENANIWLDHI SQLASPDGDT MQRIAAYFNE ALADRMLKAW PGLYKALNST KITSVSEEIL  120
VKRLFCDLCP FLKVAYVVTN QAIVEAMEGE KMVHIIDLHS CEPAQWIYLI QTLNARPEGP  180
PHLRITGIHE QKEVLDQMFH RLTEEAGNLN IPFQFNPIVS KLENLDIESL RVKTGEALAV  240
CSVLQLHSLL AADDDLRRKS PLASKNLQKV LHMNKLTLGE WLEKDPISAY NLSPDSALSP  300
LSGGSPKMGS FLTSLWGLSP KLMVITEQES NHNGHTLMDR IMEALNFYGA LFDCLESTVP  360
RSPMERQKVE KMLFGEEIKN IIACEGTERT ERHEKLEKWI LRLELAGFGR VPLSYHGMLQ  420
ARRQLQGYEG FKIKEENGCL VICWHDRPLF SISAWRFRRY E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-63274582381Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G028700.10.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007217978.10.0scarecrow-like protein 3
RefseqXP_008231435.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_008231436.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_008245676.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_008245677.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_016649864.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_020414178.10.0scarecrow-like protein 3
RefseqXP_020414179.10.0scarecrow-like protein 3
RefseqXP_020414180.10.0scarecrow-like protein 3
RefseqXP_020414181.10.0scarecrow-like protein 3
RefseqXP_020414182.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLM5WZE40.0M5WZE4_PRUPE; Uncharacterized protein
STRINGXP_008231435.10.0(Prunus mume)
STRINGXP_008245676.10.0(Prunus mume)
STRINGEMJ191770.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]