PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G028700.7.p
Common NamePRUPE_ppa005439mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 382aa    MW: 43519.4 Da    PI: 6.9422
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G028700.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS404.88.7e-124137638374
                GRAS  38 mqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaL 128
                         mqR+aayf eALa r+++ +++lykal++++ +  ++see+ + +lf +++P+lk++++++NqaI+ea+ege++vHiiD+   +++QW+ L
  Prupe.2G028700.7.p   1 MQRIAAYFNEALADRMLKAWPGLYKALNSTKIT--SVSEEILVKRLFCDLCPFLKVAYVVTNQAIVEAMEGEKMVHIIDLHSCEPAQWIYL 89 
                         8**************************999998..5******************************************************* PP

                GRAS 129 lqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll..... 214
                         +q+L++Rpegpp+lRiTg+++    +ke l ++ +rL++ A +l++pf+fn+ ++++le+l++e+Lrvk+gEalaV++vlqlh+ll     
  Prupe.2G028700.7.p  90 IQTLNARPEGPPHLRITGIHE----QKEVLDQMFHRLTEEAGNLNIPFQFNP-IVSKLENLDIESLRVKTGEALAVCSVLQLHSLLaaddd 175
                         *********************....9**************************.7999********************************** PP

                GRAS 215 ............................................desvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                                                                        +s  s +  ++L  +++lsPk++v++eqe++hn++++++r++ea
  Prupe.2G028700.7.p 176 lrrksplasknlqkvlhmnkltlgewlekdpisaynlspdsalsP--LSGGSpKMGSFLTSLWGLSPKLMVITEQESNHNGHTLMDRIMEA 264
                         ***************************************888552..3333344778********************************** PP

                GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
                         l++y alfd+le+++pr   er+kvE++l+g+ei+n++aceg+er+erhe+lekW  rle aGF+ vpls++ + qa++ l+ ++  g+++
  Prupe.2G028700.7.p 265 LNFYGALFDCLESTVPRSPMERQKVEKMLFGEEIKNIIACEGTERTERHEKLEKWILRLELAGFGRVPLSYHGMLQARRQLQGYE--GFKI 353
                         ************************************************************************************9..**** PP

                GRAS 352 eeesgslvlgWkdrpLvsvSaWr 374
                         +ee+g+lv++W+drpL+s+SaWr
  Prupe.2G028700.7.p 354 KEENGCLVICWHDRPLFSISAWR 376
                         **********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035143.0E-1211376IPR005202Transcription factor GRAS
PROSITE profilePS5098552.3321358IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MQRIAAYFNE ALADRMLKAW PGLYKALNST KITSVSEEIL VKRLFCDLCP FLKVAYVVTN  60
QAIVEAMEGE KMVHIIDLHS CEPAQWIYLI QTLNARPEGP PHLRITGIHE QKEVLDQMFH  120
RLTEEAGNLN IPFQFNPIVS KLENLDIESL RVKTGEALAV CSVLQLHSLL AADDDLRRKS  180
PLASKNLQKV LHMNKLTLGE WLEKDPISAY NLSPDSALSP LSGGSPKMGS FLTSLWGLSP  240
KLMVITEQES NHNGHTLMDR IMEALNFYGA LFDCLESTVP RSPMERQKVE KMLFGEEIKN  300
IIACEGTERT ERHEKLEKWI LRLELAGFGR VPLSYHGMLQ ARRQLQGYEG FKIKEENGCL  360
VICWHDRPLF SISAWRFRRY E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-54237857381Protein SCARECROW
5b3h_A2e-54237856380Protein SCARECROW
5b3h_D2e-54237856380Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G028700.7.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007217978.10.0scarecrow-like protein 3
RefseqXP_008231435.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_008231436.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_008245676.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_008245677.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_016649864.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_020414178.10.0scarecrow-like protein 3
RefseqXP_020414179.10.0scarecrow-like protein 3
RefseqXP_020414180.10.0scarecrow-like protein 3
RefseqXP_020414181.10.0scarecrow-like protein 3
RefseqXP_020414182.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-176SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A251QA700.0A0A251QA70_PRUPE; Uncharacterized protein
STRINGXP_008231435.10.0(Prunus mume)
STRINGXP_008245676.10.0(Prunus mume)
STRINGEMJ191770.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-178scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]