PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G028700.8.p
Common NamePRUPE_ppa005439mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 342aa    MW: 38881 Da    PI: 6.8366
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G028700.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS345.39.9e-1061433693374
                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                         ++++++NqaI+ea+ege++vHiiD+   +++QW+ L+q+L++Rpegpp+lRiTg+++    +ke l ++ +rL++ A +l++pf+fn+ ++
  Prupe.2G028700.8.p  14 VAYVVTNQAIVEAMEGEKMVHIIDLHSCEPAQWIYLIQTLNARPEGPPHLRITGIHE----QKEVLDQMFHRLTEEAGNLNIPFQFNP-IV 99 
                         689******************************************************....9**************************.79 PP

                GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrll.................................................desvsles.er 224
                         ++le+l++e+Lrvk+gEalaV++vlqlh+ll                                                    +s  s + 
  Prupe.2G028700.8.p 100 SKLENLDIESLRVKTGEALAVCSVLQLHSLLaadddlrrksplasknlqkvlhmnkltlgewlekdpisaynlspdsalsP--LSGGSpKM 188
                         99*************************************************************************888552..33333447 PP

                GRAS 225 devLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
                          ++L  +++lsPk++v++eqe++hn++++++r++eal++y alfd+le+++pr   er+kvE++l+g+ei+n++aceg+er+erhe+lekW
  Prupe.2G028700.8.p 189 GSFLTSLWGLSPKLMVITEQESNHNGHTLMDRIMEALNFYGALFDCLESTVPRSPMERQKVEKMLFGEEIKNIIACEGTERTERHEKLEKW 279
                         78***************************************************************************************** PP

                GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                           rle aGF+ vpls++ + qa++ l+ ++  g++++ee+g+lv++W+drpL+s+SaWr
  Prupe.2G028700.8.p 280 ILRLELAGFGRVPLSYHGMLQARRQLQGYE--GFKIKEENGCLVICWHDRPLFSISAWR 336
                         *****************************9..**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.3351318IPR005202Transcription factor GRAS
PfamPF035143.4E-10314336IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MRHLQTGCLK LGLVAYVVTN QAIVEAMEGE KMVHIIDLHS CEPAQWIYLI QTLNARPEGP  60
PHLRITGIHE QKEVLDQMFH RLTEEAGNLN IPFQFNPIVS KLENLDIESL RVKTGEALAV  120
CSVLQLHSLL AADDDLRRKS PLASKNLQKV LHMNKLTLGE WLEKDPISAY NLSPDSALSP  180
LSGGSPKMGS FLTSLWGLSP KLMVITEQES NHNGHTLMDR IMEALNFYGA LFDCLESTVP  240
RSPMERQKVE KMLFGEEIKN IIACEGTERT ERHEKLEKWI LRLELAGFGR VPLSYHGMLQ  300
ARRQLQGYEG FKIKEENGCL VICWHDRPLF SISAWRFRRY E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-4315338112381Protein SCARECROW
5b3h_A8e-4315338111380Protein SCARECROW
5b3h_D8e-4315338111380Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G028700.8.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007217978.10.0scarecrow-like protein 3
RefseqXP_008231435.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_008231436.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_008245676.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_008245677.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_016649864.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_020414178.10.0scarecrow-like protein 3
RefseqXP_020414179.10.0scarecrow-like protein 3
RefseqXP_020414180.10.0scarecrow-like protein 3
RefseqXP_020414181.10.0scarecrow-like protein 3
RefseqXP_020414182.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-148SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A251QA310.0A0A251QA31_PRUPE; Uncharacterized protein
STRINGXP_008231435.10.0(Prunus mume)
STRINGXP_008245676.10.0(Prunus mume)
STRINGEMJ191770.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-150scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]