PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G036500.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SRS
Protein Properties Length: 302aa    MW: 31739.6 Da    PI: 8.3841
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G036500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702167.28.9e-521192613154
              DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 
                         s+ ++C+dCGn+akk+C++ RCRtCC+ rg+dC+thvkstWvpaa+rrerq   + a         ++ s +  +          +  ++s
  Prupe.2G036500.2.p 119 SKMKACKDCGNKAKKGCEYGRCRTCCRGRGYDCSTHVKSTWVPAARRRERQMGVTVAVPGVGGGGGSSGSSSVAK--------RPRVVVPS 201
                         56679*********************************************9998888776655443333322222........22233344 PP

              DUF702  94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                         ++++ ++ ++slP++v+++avfrc rv+++++g +elaYq++v+i+Ghvf+G+Lyd+G+++
  Prupe.2G036500.2.p 202 QNANANI-KQSLPDKVRAPAVFRCHRVTAISNGAAELAYQATVKISGHVFQGLLYDHGVDK 261
                         4444333.456***********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.6E-53122260IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.2E-24124165IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.1E-24212259IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MLGLRDILLI APTPSSMHQQ NQPISSDLPL PSSTTLGVGL GIFPLLTATP CAPHAPTTAE  60
VNSDSSHFWG LRRCQELNPS KQDMLNFGNH GAQHEQVVEC EGHNNNNENE GGGGGGESSK  120
MKACKDCGNK AKKGCEYGRC RTCCRGRGYD CSTHVKSTWV PAARRRERQM GVTVAVPGVG  180
GGGGSSGSSS VAKRPRVVVP SQNANANIKQ SLPDKVRAPA VFRCHRVTAI SNGAAELAYQ  240
ATVKISGHVF QGLLYDHGVD KDNAFPCISP SHLETDTNQR NGDSASTPPL PPATACLTST  300
S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G036500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020414282.10.0protein LATERAL ROOT PRIMORDIUM 1 isoform X1
TrEMBLA0A251QAH00.0A0A251QAH0_PRUPE; Uncharacterized protein
STRINGXP_008231670.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.22e-33Lateral root primordium (LRP) protein-related