PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G036500.4.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SRS
Protein Properties Length: 281aa    MW: 29688.3 Da    PI: 7.8344
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G036500.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70291.42e-28119173357
              DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqla 57 
                         s+ ++C+dCGn+akk+C++ RCRtCC+ rg+dC+thvkstWvpaa+rrerq   +
  Prupe.2G036500.4.p 119 SKMKACKDCGNKAKKGCEYGRCRTCCRGRGYDCSTHVKSTWVPAARRRERQMGVT 173
                         56679*********************************************97655 PP
2DUF70271.32.9e-22188240102154
              DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                         ++slP++v+++avfrc rv+++++g +elaYq++v+i+Ghvf+G+Lyd+G+++
  Prupe.2G036500.4.p 188 KQSLPDKVRAPAVFRCHRVTAISNGAAELAYQATVKISGHVFQGLLYDHGVDK 240
                         467***********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.3E-25122172IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.9E-24124165IPR006510Zinc finger, lateral root primordium type 1
PfamPF051428.6E-20188239IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016241.0E-24191238IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MLGLRDILLI APTPSSMHQQ NQPISSDLPL PSSTTLGVGL GIFPLLTATP CAPHAPTTAE  60
VNSDSSHFWG LRRCQELNPS KQDMLNFGNH GAQHEQVVEC EGHNNNNENE GGGGGGESSK  120
MKACKDCGNK AKKGCEYGRC RTCCRGRGYD CSTHVKSTWV PAARRRERQM GVTVAVPGVG  180
GGGDANIKQS LPDKVRAPAV FRCHRVTAIS NGAAELAYQA TVKISGHVFQ GLLYDHGVDK  240
DNAFPCISPS HLETDTNQRN GDSASTPPLP PATACLTSTS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G036500.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007220689.21e-179protein LATERAL ROOT PRIMORDIUM 1 isoform X2
TrEMBLA0A251QAP10.0A0A251QAP1_PRUPE; Uncharacterized protein
STRINGXP_008231670.11e-173(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54430.11e-29SHI-related sequence 6