PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.2G042200.1.p

Common Name

PRUPE_ppb013494mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 100aa MW: 11772.4 Da PI: 8.6252

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.2G042200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	77	97	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k F + +L +H++ H Prupe.2G042200.1.p 77 CNLCTKKFISGTDLFNHQKYH 97 *******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.03E-5	73	99	No hit	No description
PROSITE profile	PS50157	10.783	75	99	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	77	97	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence Send to blast
MDYTYRTNMY CFPLLQVMRM ENQELFMNAN AWAECEGSVT FRNATQKQEH YMQFHPEIQT 60 SSKNEKGMKK ADKEKACNLC TKKFISGTDL FNHQKYHRG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.2G042200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	M5XSK1	7e-70	M5XSK1_PRUPE; Uncharacterized protein
STRING	EMJ21990	1e-70	(Prunus persica)

Link Out ? help Back to Top
Phytozome	Prupe.2G042200.1.p
Entrez Gene	18786866