PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G047900.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 202aa    MW: 22703.3 Da    PI: 9.3187
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G047900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.45e-201962245
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                        +i   sn qvtf+kRr g++KKA+EL++ C++e+a+++fs+ +k
  Prupe.2G047900.1.p 19 KIAKRSNLQVTFCKRRSGLFKKASELCTVCGVEIAIVVFSPANK 62
                        577899***********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-271069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.7681070IPR002100Transcription factor, MADS-box
CDDcd002659.38E-311179No hitNo description
SuperFamilySSF554554.06E-251188IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-151232IPR002100Transcription factor, MADS-box
PfamPF003191.4E-231966IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-153247IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-154768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MVMMKKKPGQ GRQKIPIAKI AKRSNLQVTF CKRRSGLFKK ASELCTVCGV EIAIVVFSPA  60
NKPFSFGHPH VESILDRFLC TPKPSTDSDF TSQQLLVDQA QGYMSDSGVH ELNMVLIQTQ  120
KHLEAEKKRG QELDEMSKAG QGSSRRCWWE NPIDEMGLHE IQILKAAMKE VKKNVIEQVN  180
KILKIQSCAA INSQYHSSDE W*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the final stages of embryo sac development. {ECO:0000269|PubMed:18713950}.
UniprotTISSUE SPECIFICITY: Expressed exclusively in the central cell of the female gametophyte and in early endosperm. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G047900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007221015.21e-149agamous-like MADS-box protein AGL61
SwissprotQ4PSU42e-49AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A251QB511e-148A0A251QB51_PRUPE; Uncharacterized protein
STRINGXP_008231614.11e-143(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-52AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]