PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G054600.1.p
Common NamePRUPE_ppa024874mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 244aa    MW: 28172.9 Da    PI: 10.6204
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G054600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-05127148223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         +C  Cg++F +++ L +H + H
  Prupe.2G054600.1.p 127 VCRVCGRRFYTNEKLLNHFKIH 148
                         6*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.658126153IPR007087Zinc finger, C2H2
SuperFamilySSF576675.38E-5126152No hitNo description
Gene3DG3DSA:3.30.160.608.2E-4127150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MLKHLKFHHI FCTVQSKRSE TLNPFTLLIR YCHFQSEPGF NSSSPTSCLP PQKIPEIAIF  60
WDLDTKPPKS VSPYEAAVKL KTAASSFRLV RHMIAYANRH ALDYVPQVVR ERKERNRVVI  120
RDGELNVCRV CGRRFYTNEK LLNHFKIHEK EHMKRLSQIE SARGSRRVKL VGKYSMKMEK  180
YKNAARDVLT PKAGRGLADE VKRAGFWVRS VVDKPQRADA ALRNHIVDMM DHRRAECLML  240
CVG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G054600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021810266.11e-159uncharacterized protein LOC110753638
TrEMBLA0A251QBR00.0A0A251QBR0_PRUPE; Uncharacterized protein
STRINGEMJ208281e-180(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75002533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-74C2H2 family protein