PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G097200.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 489aa    MW: 54197.2 Da    PI: 5.8148
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G097200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407.2e-13284330354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h + E+ RR ++N +++ Lr+l+P++     +K + a+i+  A++YIk+L
  Prupe.2G097200.1.p 284 TKHFATEKHRRVQLNGKYSALRDLVPNP-----TKTDRASIVGDAIDYIKEL 330
                         78**************************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-15284349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.43E-11284334No hitNo description
PfamPF000102.4E-10284330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-12284339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10287336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MYEDTVGCNF DQNSMPESAE SVLNLNPLPP PPPPQVLMPS PSETHNNNNN NSFAVAENLR  60
LSMEELSYPH QQDHHAAMEI ELQNELGFNP YSTNTDQNNH SSHLVSFEQP TNWDNIHGVH  120
DQMQQQLQDG ANGPYPPTPD LLNLFSLPRC SPSSVLQNSS INFTNPNPKS SNFPNSLGFL  180
GDVHGGIDTP PGTASSVLYD PLFHLNLPPQ PPLFRELLQS LPHGYSLPGS RNGSLFSSGG  240
DDREGIGGGV YSDGINNGRQ FENGVLEFSR EMGSIGRGRD VKGTKHFATE KHRRVQLNGK  300
YSALRDLVPN PTKTDRASIV GDAIDYIKEL LRTVDELKLL VEKKRCGRER SKRRRTEQDG  360
GAGDDESCNM KPLGDPHDQS YNNGSLRSSW LQRKSKDTEV DIRIIDDEVT IKLVQRKKIN  420
LLLYVSKLLD ELQLDLHHVA GGHIGNSYSF LFNTKMYEGS SLYASAIAQK LIEVLDKQYA  480
AVPPTNSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G097200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894080.0KP689408.1 Prunus pseudocerasus isolate CL2155.2 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020413510.10.0transcription factor bHLH10
RefseqXP_020413511.10.0transcription factor bHLH10
TrEMBLA0A251QGX60.0A0A251QGX6_PRUPE; Uncharacterized protein
STRINGXP_009361467.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.18e-88bHLH family protein