PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G100300.1.p
Common NamePRUPE_ppa025386mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 148aa    MW: 16477.8 Da    PI: 4.411
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G100300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.51.2e-1332120196
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgrsef 90 
                         f+ vlt+ +    ++lv+p kf ++      +s   t+ + +g+ We+++   ++s+   l  +Wk F+ +n+Lk+gD +vF+ l+  s++
  Prupe.2G100300.1.p  32 FDVVLTKTSIKPMCQLVVPGKFSATLP---SCS-IPTVLTFRGKNWEMTY--HGSSNYKRLD-NWKAFAIDNNLKVGDACVFEqLEC-SST 114
                         6778888888999*********97773...344.4577889*********..8888776676.********************5444.555 PP

                         ..EEEE CS
                  B3  91 elvvkv 96 
                         +lv++v
  Prupe.2G100300.1.p 115 RLVFRV 120
                         555443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.1E-1628121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-1528122IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-1830124No hitNo description
SMARTSM010190.001432126IPR003340B3 DNA binding domain
PROSITE profilePS5086310.72932126IPR003340B3 DNA binding domain
PfamPF023622.3E-1132119IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MGEPQMEDLS TSNPVIELEG DEFWPLSGKP FFDVVLTKTS IKPMCQLVVP GKFSATLPSC  60
SIPTVLTFRG KNWEMTYHGS SNYKRLDNWK AFAIDNNLKV GDACVFEQLE CSSTRLVFRV  120
QILRGDIPSE FLDKLDGDNV DAPIVLE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G100300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007220940.21e-106B3 domain-containing protein Os04g0386900
RefseqXP_020412717.11e-106B3 domain-containing protein Os04g0386900
RefseqXP_020412718.11e-106B3 domain-containing protein Os04g0386900
RefseqXP_020412719.11e-106B3 domain-containing protein Os04g0386900
RefseqXP_020412720.11e-106B3 domain-containing protein Os04g0386900
TrEMBLA0A251QDS61e-105A0A251QDS6_PRUPE; Uncharacterized protein
STRINGEMJ221391e-105(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97222640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-07B3 family protein