PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G104700.1.p
Common NamePRUPE_ppa012926mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 149aa    MW: 16633.2 Da    PI: 5.7751
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G104700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.12.7e-1233121196
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgrsef 90 
                         f+ vlt+ +  ++ +lv+p kf ++      +s+  t+   +g+ We+ +   ++s++  l  +W+ F+ +n+Lk+gD +vF+ l+  s++
  Prupe.2G104700.1.p  33 FDVVLTKTNIKRLYQLVVPGKFSATLP---SCSI-PTVLIFRGKNWEMIY--HGSSSHKRLD-NWRAFAVDNNLKVGDACVFEqLEC-SST 115
                         5667777777888999******97773...3443.34555799*******..8888877787.********************4444.555 PP

                         ..EEEE CS
                  B3  91 elvvkv 96 
                         +lv++v
  Prupe.2G104700.1.p 116 RLVFRV 121
                         555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.29E-1729122IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-1429123IPR015300DNA-binding pseudobarrel domain
CDDcd100173.04E-1831125No hitNo description
SMARTSM010190.002533127IPR003340B3 DNA binding domain
PROSITE profilePS5086310.84233127IPR003340B3 DNA binding domain
PfamPF023627.1E-1033120IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MKGEPRMGDL LTSNPVIELE GDEFWPLSGK PFFDVVLTKT NIKRLYQLVV PGKFSATLPS  60
CSIPTVLIFR GKNWEMIYHG SSSHKRLDNW RAFAVDNNLK VGDACVFEQL ECSSTRLVFR  120
VQILRGDISS EFLDKLGGDN VDAPIVLE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G104700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007218560.11e-106B3 domain-containing protein Os04g0386900
RefseqXP_020413869.11e-106B3 domain-containing protein Os04g0386900
TrEMBLM5X1G41e-105M5X1G4_PRUPE; Uncharacterized protein
STRINGEMJ197591e-106(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97222640