PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G138400.2.p
Common NamePRUPE_ppa001781mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 505aa    MW: 56243.1 Da    PI: 6.8814
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G138400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS253.11e-7722550387374
                GRAS  87 vsPi.lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                         +sP+ l+f+++t+NqaIleaveg +rvH+iDfdi++G+QW++++q+ a R+ g+ps++iT++ s++++++ e+  t+e+L++fA+el+++f
  Prupe.2G138400.2.p 225 LSPVvLQFANFTCNQAILEAVEGFNRVHVIDFDIGYGGQWASFMQEVALRNCGAPSFKITAFISSSTHDEFEIGFTRENLKHFASELNLSF 315
                         5674279*********************************************************9*9************************ PP

                GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                         e +++  ++l+    + L ++  E +aV + l + ++ ++++sl+      L++vk+lsPk+vv  ++ +d+++ +F+++++++l+ ys l
  Prupe.2G138400.2.p 316 ELELVSLEALN-SGSWGLPLHVSEGVAVAVNLPIGSFSNNPLSLTM----ALRFVKQLSPKIVVSLDRGSDRTDVPFAHQIIQSLHSYSGL 401
                         ***97444444.4467776666777777777777888889999999....***************************************** PP

                GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                         ++sl+a    + ++ +k+Er ll++ i+++v+ ++ +     ++   Wr  ++++GF+p+++s+++++qa++l++++++ g+++e+++ sl
  Prupe.2G138400.2.p 402 LESLDAV-NVNPDALQKIERYLLQPGIEKIVTGRHLS----PKRTPPWRTLFSSSGFSPLTFSNFTESQAECLVQRTPVGGFHIEKRQSSL 487
                         ****665.34668999****************99998....9999********************************************** PP

                GRAS 359 vlgWkdrpLvsvSaWr 374
                         vl+W+++ L+svS+Wr
  Prupe.2G138400.2.p 488 VLCWQHKDLISVSVWR 503
                         ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.668111483IPR005202Transcription factor GRAS
PfamPF035143.5E-75225503IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MMWWIKEAMM ALNPILGICN SSPNVQSTNV RLGSSSSPSP MFSASMNNTF PASLSPGMFQ  60
QQQQHMGMDE KPQIFNPQMV MNQNQAQFTQ NPAMFMPLTY AQLQEHHLLS PPPPKRFNSG  120
GFGPNYPVQR APFSNPGQEL LVRAQQQQQQ LQFLPQHLQQ QRPTMLVKEN MLSPAEGTKE  180
MMNQNQNQQQ LQQAAIDQLF NAAELIETGN PALAQGILAR LNHQLSPVVL QFANFTCNQA  240
ILEAVEGFNR VHVIDFDIGY GGQWASFMQE VALRNCGAPS FKITAFISSS THDEFEIGFT  300
RENLKHFASE LNLSFELELV SLEALNSGSW GLPLHVSEGV AVAVNLPIGS FSNNPLSLTM  360
ALRFVKQLSP KIVVSLDRGS DRTDVPFAHQ IIQSLHSYSG LLESLDAVNV NPDALQKIER  420
YLLQPGIEKI VTGRHLSPKR TPPWRTLFSS SGFSPLTFSN FTESQAECLV QRTPVGGFHI  480
EKRQSSLVLC WQHKDLISVS VWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-2323150391375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G138400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007220242.10.0scarecrow-like protein 6
SwissprotO813161e-112SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A251QGS50.0A0A251QGS5_PRUPE; Uncharacterized protein
STRINGEMJ214410.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-114GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]