PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G138400.5.p
Common NamePRUPE_ppa001781mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 703aa    MW: 77152.5 Da    PI: 5.8603
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G138400.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS326.35.9e-1003437012374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         +++L+++Ae +++g+ +laq +Larl+++ sp g+p+qR+a+yf+eAL+  l+   ++  ++ + s+    + + ++ a+k fse+sP+l+
  Prupe.2G138400.5.p 343 IDQLFNAAELIETGNPALAQGILARLNHQLSPVGKPFQRAAFYFKEALQLLLHI-NTSSNSSNALSPF---SLIFKIGAYKSFSEISPVLQ 429
                         689***********************************************9998.3333333444444...49****************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                         f+++t+NqaIleaveg +rvH+iDfdi++G+QW++++q+ a R+ g+ps++iT++ s++++++ e+  t+e+L++fA+el+++fe +++  
  Prupe.2G138400.5.p 430 FANFTCNQAILEAVEGFNRVHVIDFDIGYGGQWASFMQEVALRNCGAPSFKITAFISSSTHDEFEIGFTRENLKHFASELNLSFELELVSL 520
                         *********************************************************9*9***************************9744 PP

                GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                         ++l+    + L ++  E +aV + l + ++ ++++sl+      L++vk+lsPk+vv  ++ +d+++ +F+++++++l+ ys l++sl+a 
  Prupe.2G138400.5.p 521 EALN-SGSWGLPLHVSEGVAVAVNLPIGSFSNNPLSLTM----ALRFVKQLSPKIVVSLDRGSDRTDVPFAHQIIQSLHSYSGLLESLDAV 606
                         4444.4467776666777777777777888889999999....*********************************************665 PP

                GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                            + ++ +k+Er ll++ i+++v+ ++ +     ++   Wr  ++++GF+p+++s+++++qa++l++++++ g+++e+++ slvl+W+++
  Prupe.2G138400.5.p 607 -NVNPDALQKIERYLLQPGIEKIVTGRHLS----PKRTPPWRTLFSSSGFSPLTFSNFTESQAECLVQRTPVGGFHIEKRQSSLVLCWQHK 692
                         .34668999****************99998....9999***************************************************** PP

                GRAS 366 pLvsvSaWr 374
                          L+svS+Wr
  Prupe.2G138400.5.p 693 DLISVSVWR 701
                         ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.015316681IPR005202Transcription factor GRAS
PfamPF035142.0E-97343701IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MKAMPLPFEQ FQGKGVLDFS SSTSDSQPPQ NQHLHHHHNQ QQQQQKWNQN SNKENCYVGS  60
TEPTSVLDAR RSPSPPTSSS TLSSSLGGGG GASGGGGGGS GSTDTTTCLG TTAAAVYENI  120
SQTPIEESKC GPALGMEDWE SVLPESPGQE QSILRLIMSD IEDPSLGLNK LLQSGSGSDQ  180
QDLEFSAGFH DVVDQGGYDG FEPNTGNLQQ QHMGMDEKPQ IFNPQMVMNQ NQAQFTQNPA  240
MFMPLTYAQL QEHHLLSPPP PKRFNSGGFG PNYPVQRAPF SNPGQELLVR AQQQQQQLQF  300
LPQHLQQQRP TMLVKENMLS PAEGTKEMMN QNQNQQQLQQ AAIDQLFNAA ELIETGNPAL  360
AQGILARLNH QLSPVGKPFQ RAAFYFKEAL QLLLHINTSS NSSNALSPFS LIFKIGAYKS  420
FSEISPVLQF ANFTCNQAIL EAVEGFNRVH VIDFDIGYGG QWASFMQEVA LRNCGAPSFK  480
ITAFISSSTH DEFEIGFTRE NLKHFASELN LSFELELVSL EALNSGSWGL PLHVSEGVAV  540
AVNLPIGSFS NNPLSLTMAL RFVKQLSPKI VVSLDRGSDR TDVPFAHQII QSLHSYSGLL  600
ESLDAVNVNP DALQKIERYL LQPGIEKIVT GRHLSPKRTP PWRTLFSSSG FSPLTFSNFT  660
ESQAECLVQR TPVGGFHIEK RQSSLVLCWQ HKDLISVSVW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-3135770118375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G138400.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016650249.10.0PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 22
SwissprotO813161e-144SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A251QFH20.0A0A251QFH2_PRUPE; Uncharacterized protein
STRINGXP_008341645.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-141GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]