PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G146500.1.p
Common NamePRUPE_ppa017589mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 233aa    MW: 25008.5 Da    PI: 8.1634
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G146500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.31.5e-39241241100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC k+C++apyf +eq +++fa+vhk+FGasn +kll ++p+++r da+ +l+yeA ar+rdPvyG+v++i++lqqq+ +l
  Prupe.2G146500.1.p  24 PCGACKFLRRKCIKGCIFAPYFDSEQgTAHFAAVHKVFGASNASKLLLRIPPHKRLDAVVTLCYEALARVRDPVYGCVSHIFTLQQQVVNL 114
                         7***********************9989*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +aela+++++
  Prupe.2G146500.1.p 115 QAELAYVQAR 124
                         ******9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.42423125IPR004883Lateral organ boundaries, LOB
PfamPF031954.1E-3824122IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSGSSTNGSN NNGGGGGGGG GGGPCGACKF LRRKCIKGCI FAPYFDSEQG TAHFAAVHKV  60
FGASNASKLL LRIPPHKRLD AVVTLCYEAL ARVRDPVYGC VSHIFTLQQQ VVNLQAELAY  120
VQARLATLQR APPPLPLPQL ECPPPPRSLH YSSSHINVTS PPCSEFVPTS NLLTHFDPLQ  180
TVPHTAEMTS LFNSLDQELI DGEDLQALAR EFVCRYLPGV RLNKPSTSHQ NF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-38201257111LOB family transfactor Ramosa2.1
5ly0_B2e-38201257111LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G146500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007220875.11e-171LOB domain-containing protein 19
SwissprotO813224e-66LBD31_ARATH; LOB domain-containing protein 31
TrEMBLM5X8001e-170M5X800_PRUPE; Uncharacterized protein
STRINGEMJ220741e-171(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.18e-61LOB domain-containing protein 19