PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.2G169900.2.p

Common Name

PRUPE_ppa002199mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

BES1

Protein Properties

Length: 619aa MW: 68672.3 Da PI: 5.413

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.2G169900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	144.4	1e-44	80	216	2	135
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpleeaeaagssasas 89 g +r ++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++ +g +p ++aa+ss+ +s Prupe.2G169900.2.p 80 GVRRCRPIEEKERTKLRERQRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPaksQGPRPAGVNSAAVSSQMVS 170 6789999***********************************************************963344444488889999999 PP DUF822 90 pesslqsslkssalaspvesysaspksssfpspssldsislasaas 135 p+++ +++ ++s +s e ++ +k + +ps+s +d s+a +++ Prupe.2G169900.2.p 171 PQTPASLKGVTSGYRSSGELNACNMKGVFIPSSSPYDLPSSARSQN 216 ****9999*************************988776544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.9E-38	82	211	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
Gene3D	G3DSA:3.20.20.80	2.7E-170	259	605	IPR013781	Glycoside hydrolase, catalytic domain
SuperFamily	SSF51445	2.61E-152	261	617	IPR017853	Glycoside hydrolase superfamily
Pfam	PF01373	1.0E-94	266	597	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.1E-60	297	311	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.1E-60	318	336	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.1E-60	340	361	IPR001554	Glycoside hydrolase, family 14
PROSITE pattern	PS00506	0	344	352	IPR018238	Glycoside hydrolase, family 14, conserved site
PRINTS	PR00750	2.1E-60	433	455	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.1E-60	506	525	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.1E-60	540	556	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.1E-60	557	568	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.1E-60	575	598	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence Send to blast
MATDIQKLIG TSEEDEDEEM EMDVKEEGDD DDEEDGEKNV DATSMIAGVD GGMPTRSSNN 60 NRFQQHHQIQ EQVGTPGGGG VRRCRPIEEK ERTKLRERQR RAITARILAG LRRHGNYNLR 120 VRADINDVIA ALAREAGWVV LPDGTTFPAK SQGPRPAGVN SAAVSSQMVS PQTPASLKGV 180 TSGYRSSGEL NACNMKGVFI PSSSPYDLPS SARSQNSSIV GDGGGQTDSH PLIGGSMDNV 240 GDKQIVDIPL KLPERDYSNT SCIPVYVMLP LGVINMKCEM VDPDGLLKQL RILKSVNVDG 300 VMVDCWWGIV EGHAPGEYNW NGYKRLFQMV CELKLKLQVV MSFHECGGNV GDDVCIPLPH 360 WVAEIGRSNP DIFFTDREGR RNPECLSWGI DKERVLRGRT AVEVYFDCMR SFRVEFDEYF 420 KNGNISMIQV GLGPCGELRF PSCPVKHGWR YPGIGEFQCY DLYLLKSLRK AAEARGHSFW 480 GRGPDNAGSY NSRPHETGFF CDGGDYDSYY GRFFLNWYSR VLVDHGDRVL SLAKLAFDGT 540 CIAAKLSGLH WWYKTASHAA ELAAGFYNPC NRDGYAAIVT MLKKHEATLN LACTELHMLD 600 QHEDFQEALG DSEGLFWC*

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence Send to blast

MATDIQKLIG TSEEDEDEEM EMDVKEEGDD DDEEDGEKNV DATSMIAGVD GGMPTRSSNN  60
NRFQQHHQIQ EQVGTPGGGG VRRCRPIEEK ERTKLRERQR RAITARILAG LRRHGNYNLR  120
VRADINDVIA ALAREAGWVV LPDGTTFPAK SQGPRPAGVN SAAVSSQMVS PQTPASLKGV  180
TSGYRSSGEL NACNMKGVFI PSSSPYDLPS SARSQNSSIV GDGGGQTDSH PLIGGSMDNV  240
GDKQIVDIPL KLPERDYSNT SCIPVYVMLP LGVINMKCEM VDPDGLLKQL RILKSVNVDG  300
VMVDCWWGIV EGHAPGEYNW NGYKRLFQMV CELKLKLQVV MSFHECGGNV GDDVCIPLPH  360
WVAEIGRSNP DIFFTDREGR RNPECLSWGI DKERVLRGRT AVEVYFDCMR SFRVEFDEYF  420
KNGNISMIQV GLGPCGELRF PSCPVKHGWR YPGIGEFQCY DLYLLKSLRK AAEARGHSFW  480
GRGPDNAGSY NSRPHETGFF CDGGDYDSYY GRFFLNWYSR VLVDHGDRVL SLAKLAFDGT  540
CIAAKLSGLH WWYKTASHAA ELAAGFYNPC NRDGYAAIVT MLKKHEATLN LACTELHMLD  600
QHEDFQEALG DSEGLFWC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wds_A	1e-127	263	604	12	354	Beta-amylase
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.2G169900.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007220223.1	0.0	beta-amylase 7
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	M5X7F8	0.0	M5X7F8_PRUPE; Beta-amylase
STRING	EMJ21422	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Link Out ? help Back to Top
Phytozome	Prupe.2G169900.2.p
Entrez Gene	18784624

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]