PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.2G211400.2.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 1537aa MW: 171026 Da PI: 6.4071

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.2G211400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00088	1507	1533	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg sF+ s++ rH r+ H Prupe.2G211400.2.p 1507 YQCKveGCGLSFRFVSDFSRHRRKtgH 1533 99*********************9777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00545	1.1E-14	15	55	IPR003349	JmjN domain
PROSITE profile	PS51183	13.966	16	57	IPR003349	JmjN domain
Pfam	PF02375	1.4E-14	17	50	IPR003349	JmjN domain
SMART	SM00558	2.5E-24	294	446	IPR003347	JmjC domain
SuperFamily	SSF51197	9.61E-16	295	444	No hit	No description
PROSITE profile	PS51184	23.008	297	446	IPR003347	JmjC domain
Pfam	PF02373	8.2E-21	327	420	IPR003347	JmjC domain
SMART	SM00355	17	1424	1446	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	0.16	1447	1471	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.51E-5	1447	1484	No hit	No description
PROSITE profile	PS50157	11.863	1447	1476	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.2E-4	1448	1475	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	1449	1471	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	8.6E-10	1476	1501	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.946	1477	1506	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0016	1477	1501	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	1479	1501	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.07E-10	1487	1529	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.0E-11	1502	1530	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.556	1507	1536	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.23	1507	1533	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	1509	1533	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009741	Biological Process	response to brassinosteroid
GO:0009826	Biological Process	unidimensional cell growth
GO:0033169	Biological Process	histone H3-K9 demethylation
GO:0048577	Biological Process	negative regulation of short-day photoperiodism, flowering
GO:0048579	Biological Process	negative regulation of long-day photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1537 aa Download sequence Send to blast
MGDVEIPNWL KGLPLAPEFR PTHTEFADPI AYISKIEKEA SEFGICKIIP PLPKPSKRYV 60 FSNLNKSLAK CPELGSDVNL LNDCSPLKTG SGDGRSDGEA RAVFTTRHQE LGQSVKRVKG 120 AAVQNPPSGV HKQVWQSGEI YTLEQFESKS RAFARSILGT IKEVSPLLIE EMFWKAASEK 180 PIYVEYANDV PGSAFEEPVG QFRYTNRRRR KRNSYHRSRE NSDSKTSDLI SSSERDSHSI 240 EVKNASPKNV SDTCLEVSKS STAPEILSAE ETSQSSRRKN PNACCDTEGT AGWRLSNSPW 300 NLQVIARSPG SLTRFMPDDI PGVTSPMVYI GMLFSWFAWH VEDHELHSMN FLHTGSSKTW 360 YAVPGDYAFD FEELIRTEAF GGNVDRLAAL SLLGNKTTLI SPEVVVASGI PCCRLIQNPG 420 FNCGEAANFG TPHWLEVAKE AAVRRAAMNY LPMLSHQQLL YLLTMSFVSR VPRSLLPGVR 480 GSRMRDRQKE ERELSVKKAF VEDMLKENDV LSVLLQKESS YHAVLWNPDL LPYTSKEPLT 540 PSAGAPVDMK PKENATHIQC GNNNNDQNLL FDEMSLYMEN MNDLYLGSDD LSCDFQVDSG 600 TLACVACGIL GFPFMSVVQP SEKASVKLQP EYFLAQEFPG VSGLEKSHLS TGHQAFVKGC 660 VTEDPSLVPN VMSPAKDPLI PSTTKLNKDW NTVNKFLRPR SFCLEHAVEI VELLQSKGGA 720 NVLVICHSDY QKIKAPSAAI AEEIGCSFNY TEVPLDIASK EDLNLIDLAV DDEHDECRED 780 WTSKLGINLR YCVKVRKNSS SKQVQHALTL GGLFSKQSPS SDFQRVKWQS KRSRSKKLNH 840 PAHCRPCGSI EKKDEVVERK SDDTSIKRDE KIIQYSRRNY KLKAGDSTGA GRICGYPATC 900 GKGDKHGRMA SESNIRDIGN STSSCERFYS SKSNRMSETY PVVQMLEATK DISLYSTPSQ 960 VAAKLATTTL IAEGVEAQVE NHSSEGRNMY GEGCGLVSRD SSDMQDEIAI PEEASENKSE 1020 VRMVNTVMEI SCMNSEVCDS MTLGDEVQPE NQTTNKRNDK APVSCSSHLS QDPTFAAAED 1080 YDGCPRETHI ADEFSKDVSL EFKLEEEIKS LKGRNEEPSL SPTRQINEPS PASIEGTSGV 1140 PRELCAAEDS FPGPISCSEE FRTADRSEGE HVSTSVTQME ITQPCISMEE SSQVPRGCSS 1200 EEGPDNGVTS DTVQQEVQTT NGPIKEPILG LVIETENQPT PGSVEEFEVL RVTCATDNIN 1260 SFVALDNKEQ RKNRTTNSSE ELIYSQDIAR CQPLPASIQT YSRIKREPRA AQGLRNSTEV 1320 CLSPLDKELE SSGSSIADPA PIPEMGRKRK REVEQIKDDN FNFNGFIRGP CEGLRPRAGK 1380 DAMSRSGIDN LHKEVEEKPV TKKVKKPSDP PNPKYKKEQE RKSHRCDLEG CRMSFGTKAE 1440 LVLHKRNRCP HEGCGKRFSS HNYAMIHSRV HDDDRPLKCP WKGCSMSFKW AWARTEHIRV 1500 HTGERPYQCK VEGCGLSFRF VSDFSRHRRK TGHYVS*

Sequence ? help Back to Top

Protein Sequence Length: 1537 aa Download sequence Send to blast

MGDVEIPNWL KGLPLAPEFR PTHTEFADPI AYISKIEKEA SEFGICKIIP PLPKPSKRYV  60
FSNLNKSLAK CPELGSDVNL LNDCSPLKTG SGDGRSDGEA RAVFTTRHQE LGQSVKRVKG  120
AAVQNPPSGV HKQVWQSGEI YTLEQFESKS RAFARSILGT IKEVSPLLIE EMFWKAASEK  180
PIYVEYANDV PGSAFEEPVG QFRYTNRRRR KRNSYHRSRE NSDSKTSDLI SSSERDSHSI  240
EVKNASPKNV SDTCLEVSKS STAPEILSAE ETSQSSRRKN PNACCDTEGT AGWRLSNSPW  300
NLQVIARSPG SLTRFMPDDI PGVTSPMVYI GMLFSWFAWH VEDHELHSMN FLHTGSSKTW  360
YAVPGDYAFD FEELIRTEAF GGNVDRLAAL SLLGNKTTLI SPEVVVASGI PCCRLIQNPG  420
FNCGEAANFG TPHWLEVAKE AAVRRAAMNY LPMLSHQQLL YLLTMSFVSR VPRSLLPGVR  480
GSRMRDRQKE ERELSVKKAF VEDMLKENDV LSVLLQKESS YHAVLWNPDL LPYTSKEPLT  540
PSAGAPVDMK PKENATHIQC GNNNNDQNLL FDEMSLYMEN MNDLYLGSDD LSCDFQVDSG  600
TLACVACGIL GFPFMSVVQP SEKASVKLQP EYFLAQEFPG VSGLEKSHLS TGHQAFVKGC  660
VTEDPSLVPN VMSPAKDPLI PSTTKLNKDW NTVNKFLRPR SFCLEHAVEI VELLQSKGGA  720
NVLVICHSDY QKIKAPSAAI AEEIGCSFNY TEVPLDIASK EDLNLIDLAV DDEHDECRED  780
WTSKLGINLR YCVKVRKNSS SKQVQHALTL GGLFSKQSPS SDFQRVKWQS KRSRSKKLNH  840
PAHCRPCGSI EKKDEVVERK SDDTSIKRDE KIIQYSRRNY KLKAGDSTGA GRICGYPATC  900
GKGDKHGRMA SESNIRDIGN STSSCERFYS SKSNRMSETY PVVQMLEATK DISLYSTPSQ  960
VAAKLATTTL IAEGVEAQVE NHSSEGRNMY GEGCGLVSRD SSDMQDEIAI PEEASENKSE  1020
VRMVNTVMEI SCMNSEVCDS MTLGDEVQPE NQTTNKRNDK APVSCSSHLS QDPTFAAAED  1080
YDGCPRETHI ADEFSKDVSL EFKLEEEIKS LKGRNEEPSL SPTRQINEPS PASIEGTSGV  1140
PRELCAAEDS FPGPISCSEE FRTADRSEGE HVSTSVTQME ITQPCISMEE SSQVPRGCSS  1200
EEGPDNGVTS DTVQQEVQTT NGPIKEPILG LVIETENQPT PGSVEEFEVL RVTCATDNIN  1260
SFVALDNKEQ RKNRTTNSSE ELIYSQDIAR CQPLPASIQT YSRIKREPRA AQGLRNSTEV  1320
CLSPLDKELE SSGSSIADPA PIPEMGRKRK REVEQIKDDN FNFNGFIRGP CEGLRPRAGK  1380
DAMSRSGIDN LHKEVEEKPV TKKVKKPSDP PNPKYKKEQE RKSHRCDLEG CRMSFGTKAE  1440
LVLHKRNRCP HEGCGKRFSS HNYAMIHSRV HDDDRPLKCP WKGCSMSFKW AWARTEHIRV  1500
HTGERPYQCK VEGCGLSFRF VSDFSRHRRK TGHYVS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6a57_A	5e-51	1423	1535	22	134	Lysine-specific demethylase REF6
6a58_A	5e-51	1423	1535	22	134	Lysine-specific demethylase REF6
6a59_A	5e-51	1423	1535	22	134	Lysine-specific demethylase REF6
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1404	1421	KKPSDPPNPKYKKEQERK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed at low levels in cotyledons and leaves. Detected in inflorescences, stems, roots and siliques but not in shoot apical meristems or root tips. {ECO:0000269\|PubMed:15377760, ECO:0000269\|PubMed:18713399}.

Functional Description ? help Back to Top
Source	Description
UniProt	Acts probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269\|PubMed:15377760, ECO:0000269\|PubMed:18467490, ECO:0000269\|PubMed:19946624}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.2G211400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020412564.1	0.0	probable lysine-specific demethylase ELF6
Swissprot	Q6BDA0	0.0	ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBL	A0A251QJ75	0.0	A0A251QJ75_PRUPE; Uncharacterized protein
STRING	XP_008233302.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Prupe.2G211400.2.p

Publications ? help Back to Top
Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A. PLoS ONE, 2013. 8(7): p. e67987 [PMID:23976921] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Crevillén P, et al. Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state. Nature, 2014. 515(7528): p. 587-90 [PMID:25219852] Yang H,Howard M,Dean C Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74 [PMID:27482092]