PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G213000.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 661aa    MW: 73693.2 Da    PI: 7.1441
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G213000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.23.3e-23122223199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF  
  Prupe.2G213000.1.p 122 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFF- 209
                         89****************************986445444..8999*********************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          + +++ l+v+++r+
  Prupe.2G213000.1.p 210 -RAESGDLCVGIRRA 223
                         .4489999****997 PP
2Auxin_resp112.73.6e-37283366183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa+ a+++++FevvY+Prast+eF+vk+ +v++a++++++ GmRfkm fetedss++++ +Gt++ v+ +dp+rWp+S+Wr+L+
  Prupe.2G213000.1.p 283 AATLAASGQPFEVVYYPRASTPEFCVKATSVRAAMQIQWCSGMRFKMPFETEDSSRISWfMGTISYVRVADPSRWPESPWRLLQ 366
                         68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-29117226IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-36117225IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-20121222No hitNo description
SMARTSM010192.8E-22122224IPR003340B3 DNA binding domain
PROSITE profilePS5086312.999122224IPR003340B3 DNA binding domain
PfamPF023622.7E-21122223IPR003340B3 DNA binding domain
PfamPF065072.3E-32283366IPR010525Auxin response factor
PROSITE profilePS5174514.678585660IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MITVMDSVRD PMNNNSKNWL DSKFWHACAG GMVQMPHINS KVFYFPQGHA ECAHGKVDFG  60
NCRIPPLILS RISAITYMAD HETDEVYAKM RLIPIRENAF DLEDEFVENN GTVENPEKPT  120
SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSAEPPVQ TILAKDVHGE IWKFRHIYRG  180
TPRRHLLTTG WSNFVNQKKL VAGDSIVFFR AESGDLCVGI RRAKRGIGGG PEYPSGWNPA  240
AENSGSHYPG YSGFPRENGN HLMERNSSGE WRGKIRAEYV IEAATLAASG QPFEVVYYPR  300
ASTPEFCVKA TSVRAAMQIQ WCSGMRFKMP FETEDSSRIS WFMGTISYVR VADPSRWPES  360
PWRLLQVSWD EPDLLQNVKR VSPWLVELVS SIPAIHLSPF SPPRKKLRLQ HNPDYSLFSQ  420
FPMPSVCSNF LNSSNPLCSV SDKISAGIQG ARQAQFELSS SDVFFNKLHS GMFPVGFQKL  480
GHFAPSGIPE GNFMHVAESN ENISSCLTKG IPSQSLKGNG EIKTPHIFLF GQLILTEQQM  540
SKSSSGNCSD GSGSALHRNG SVENSSDEGS PWNRDHQKSN VSLETSYCKV FIESGDVGTL  600
DLSVLGSYKE LYGKLADMFG LKNSEMLRNV LYRDVEGAIK HTEDEPFSEF LKTARRLYMG  660
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-77138733388Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G213000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020414283.10.0auxin response factor 18
RefseqXP_020414284.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A251QMG50.0A0A251QMG5_PRUPE; Auxin response factor
STRINGXP_008233318.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]