PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G213000.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 480aa    MW: 53897.9 Da    PI: 7.9794
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G213000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.92e-23122223199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF  
  Prupe.2G213000.2.p 122 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFF- 209
                         89****************************986445444..8999*********************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          + +++ l+v+++r+
  Prupe.2G213000.2.p 210 -RAESGDLCVGIRRA 223
                         .4489999****997 PP
2Auxin_resp113.32.2e-37283366183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa+ a+++++FevvY+Prast+eF+vk+ +v++a++++++ GmRfkm fetedss++++ +Gt++ v+ +dp+rWp+S+Wr+L+
  Prupe.2G213000.2.p 283 AATLAASGQPFEVVYYPRASTPEFCVKATSVRAAMQIQWCSGMRFKMPFETEDSSRISWfMGTISYVRVADPSRWPESPWRLLQ 366
                         68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.16E-29116226IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-37117225IPR015300DNA-binding pseudobarrel domain
CDDcd100173.79E-21121222No hitNo description
SMARTSM010192.8E-22122224IPR003340B3 DNA binding domain
PROSITE profilePS5086312.999122224IPR003340B3 DNA binding domain
PfamPF023621.6E-21122223IPR003340B3 DNA binding domain
PfamPF065071.4E-32283366IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MITVMDSVRD PMNNNSKNWL DSKFWHACAG GMVQMPHINS KVFYFPQGHA ECAHGKVDFG  60
NCRIPPLILS RISAITYMAD HETDEVYAKM RLIPIRENAF DLEDEFVENN GTVENPEKPT  120
SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSAEPPVQ TILAKDVHGE IWKFRHIYRG  180
TPRRHLLTTG WSNFVNQKKL VAGDSIVFFR AESGDLCVGI RRAKRGIGGG PEYPSGWNPA  240
AENSGSHYPG YSGFPRENGN HLMERNSSGE WRGKIRAEYV IEAATLAASG QPFEVVYYPR  300
ASTPEFCVKA TSVRAAMQIQ WCSGMRFKMP FETEDSSRIS WFMGTISYVR VADPSRWPES  360
PWRLLQVSWD EPDLLQNVKR VSPWLVELVS SIPAIHLSPF SPPRKKLRLQ HNPDYSLFSQ  420
FPMPSVCSNF LNSSNPLCSV SDKISAGIQG ARQAQFELSS SDVFFNKLHS ANSYRATDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-79138733388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G213000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020414283.10.0auxin response factor 18
RefseqXP_020414284.10.0auxin response factor 18
SwissprotQ93YR90.0ARFP_ARATH; Auxin response factor 16
TrEMBLA0A251QJ540.0A0A251QJ54_PRUPE; Auxin response factor
STRINGXP_008233318.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Yang ZB, et al.
    TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2889-904
    [PMID:25052716]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Zhang GZ, et al.
    Ectopic expression of UGT75D1, a glycosyltransferase preferring indole-3-butyric acid, modulates cotyledon development and stress tolerance in seed germination of Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 90(1-2): p. 77-93
    [PMID:26496910]
  4. Ye Y, et al.
    Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination.
    Plant J., 2016. 85(1): p. 3-15
    [PMID:26611158]
  5. Liu Z, et al.
    Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana.
    Plant J., 2016. 87(4): p. 391-402
    [PMID:27189514]
  6. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  7. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  8. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]