PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G252700.1.p
Common NamePRUPE_ppa017892mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 240aa    MW: 26470.7 Da    PI: 6.5128
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G252700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.57.2e-191257147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+W+++Ed  l+++v+q+G+++W++I+  ++ gR++k+c++rw + 
  Prupe.2G252700.1.p 12 KGSWSPQEDSTLIKLVAQHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 57
                        799*****************************.***********985 PP
2Myb_DNA-binding58.51.5e-1866108347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++T++Ed ++v+a++++G++ W+tIar ++ gRt++ +k++w++ 
  Prupe.2G252700.1.p  66 SFTPQEDNIIVRAHALHGNK-WATIARLLP-GRTDNAIKNHWNST 108
                         79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.455762IPR017930Myb domain
SuperFamilySSF466891.31E-2910105IPR009057Homeodomain-like
SMARTSM007171.2E-151160IPR001005SANT/Myb domain
PfamPF002491.9E-181257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-241365IPR009057Homeodomain-like
CDDcd001678.61E-151456No hitNo description
SMARTSM007171.2E-1563111IPR001005SANT/Myb domain
PROSITE profilePS5129421.10463113IPR017930Myb domain
PfamPF002496.9E-1665108IPR001005SANT/Myb domain
CDDcd001671.03E-1266109No hitNo description
Gene3DG3DSA:1.10.10.603.3E-2366112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSVINSDEDR VKGSWSPQED STLIKLVAQH GPRNWSLIST GIPGRSGKSC RLRWCNQLSP  60
TVQHKSFTPQ EDNIIVRAHA LHGNKWATIA RLLPGRTDNA IKNHWNSTLR RRRQLAELSS  120
ASSDSNSVAQ IRYEPGMKRQ CLRASPEPDS FKADVGGDGV VETSLTLLPP GEKEENEVIL  180
KSEDHDDEGK CAVEMEETCL LTIMQRMIAQ EVRNYVDGLR AEAGPTSFGL QSAGLQNDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-39111123104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G252700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7700275e-81KC770027.1 Pyrus pyrifolia microsatellite TXY079 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007221111.21e-179transcription factor MYB25
TrEMBLM5XTD91e-177M5XTD9_PRUPE; Uncharacterized protein
STRINGEMJ223101e-178(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116002935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.13e-54myb domain protein 70