PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.2G286000.2.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 141aa MW: 15098.3 Da PI: 10.1675

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.2G286000.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.2	0.00069	3	21	37	55
-STCHHHHHHHHHHHHHHH CS HLH 37 KlsKaeiLekAveYIksLq 55 K s ae +Av+YIk+Lq Prupe.2G286000.2.p 3 KRSLAEHMNEAVNYIKHLQ 21 778899999*********9 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MGKRSLAEHM NEAVNYIKHL QTRIKVLGRR RDELKIGTSS LPSLSASSST SSTSPRVAVH 60 PCFGGVEIVI SRGGSVEQGL VLSRLLKILL GQGLTVISCA TTQVNGRLVY TIQSEVSDPA 120 WGDFSGLQQI LTESLTRFSN *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.2G286000.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007221049.2	1e-96	transcription factor bHLH120
Swissprot	Q9FLI0	9e-28	BH120_ARATH; Transcription factor bHLH120
TrEMBL	A0A251QMY4	3e-96	A0A251QMY4_PRUPE; Uncharacterized protein
TrEMBL	A0A251QN49	3e-95	A0A251QN49_PRUPE; Uncharacterized protein
STRING	XP_008234323.1	1e-63	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	8e-28	bHLH family protein

Link Out ? help Back to Top
Phytozome	Prupe.2G286000.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]