PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G287500.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 218aa    MW: 24927.5 Da    PI: 8.8106
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G287500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF953.4e-30959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien + rqvtfskRrng+lKKA+ELSvLCda+v+viifs++g+lye+ss
  Prupe.2G287500.1.p  9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAQVSVIIFSQKGRLYEFSS 59
                        79***********************************************96 PP
2K-box75.21.8e-2580171898
               K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                         +   e+  e+l++e++ + k+ienL+ +qR+llG +L+s+s++eLq++  qLe+s++kiR++K +l+ eq+e+l+ ke+ l een +L+++
  Prupe.2G287500.1.p  80 KiEVEEYVEQLKHESTAMAKKIENLEASQRKLLGHGLDSCSVEELQEITGQLERSVRKIRERKAHLFAEQMEQLRAKERLLIEENAKLSEE 170
                         3356777899******************************************************************************998 PP

               K-box  98 l 98 
                         +
  Prupe.2G287500.1.p 171 F 171
                         7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.029161IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-33380IPR002100Transcription factor, MADS-box
CDDcd002657.61E-42378No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-303859IPR002100Transcription factor, MADS-box
PfamPF014866.2E-2587171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.82387177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVRGKIEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AQVSVIIFSQ KGRLYEFSSS  60
DMQDTIKRYH KHAKAGQTNK IEVEEYVEQL KHESTAMAKK IENLEASQRK LLGHGLDSCS  120
VEELQEITGQ LERSVRKIRE RKAHLFAEQM EQLRAKERLL IEENAKLSEE FGAQPRQLLL  180
QQQLSVEEKG AVSYWSQSSL SSEVETELFI GPPVTRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A8e-19184186MEF2 CHIMERA
6bz1_B8e-19184186MEF2 CHIMERA
6bz1_C8e-19184186MEF2 CHIMERA
6bz1_D8e-19184186MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}.
UniprotTISSUE SPECIFICITY: Expressed in quiescent center (QC) cells of root tips (PubMed:18162590, PubMed:21689171). Expressed at the base of the petiole of cotyledons and leaves, in flower buds, petals, sepals and abscission zone of flowers and siliques. {ECO:0000269|PubMed:18162590, ECO:0000269|PubMed:21689171}.
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G287500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP9389640.0KP938964.1 Prunus mume SOC1-like protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007219737.21e-157MADS-box protein AGL42 isoform X1
SwissprotQ9FIS13e-80AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A251QN701e-156A0A251QN70_PRUPE; Uncharacterized protein
STRINGXP_008234315.11e-139(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.31e-82AGAMOUS-like 42