PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G290000.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 135aa    MW: 14839.9 Da    PI: 8.4916
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G290000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.67.7e-3751041100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+C++dC++ pyfp ++p++fa vh+++Gasnv k+l++lp++ r +a+++l+yeAe+r++d vyG+v++i++l+q++++++
  Prupe.2G290000.1.p   5 RCAACKYLRRRCPSDCIFFPYFPPNNPERFASVHRIYGASNVAKMLQQLPHHLRGEAADTLCYEAECRTQDCVYGCVKTISQLHQEINKAE 95 
                         6****************************************************************************************** PP

              DUF260  92 aelallkee 100
                          +la++++e
  Prupe.2G290000.1.p  96 CQLAKTRAE 104
                         ****99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.6114105IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-385102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MISGRCAACK YLRRRCPSDC IFFPYFPPNN PERFASVHRI YGASNVAKML QQLPHHLRGE  60
AADTLCYEAE CRTQDCVYGC VKTISQLHQE INKAECQLAK TRAEIAFISS SGGQGRTTTT  120
STSTSLPITS STQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-34610512111LOB family transfactor Ramosa2.1
5ly0_B2e-34610512111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G290000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007219781.21e-96LOB domain-containing protein 24
SwissprotP594684e-48LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A251QN992e-95A0A251QN99_PRUPE; Uncharacterized protein
STRINGEMJ209803e-79(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36973066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.13e-49LOB domain-containing protein 24