PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.2G308900.2.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Nin-like

Protein Properties

Length: 227aa MW: 26225.6 Da PI: 4.5752

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.2G308900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.1	3.2e-27	165	214	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + ++l++++kyF+lpi++AAk+L+v+lTvLKr+CR+++I+RWPhRkiksl Prupe.2G308900.2.p 165 AALELDEIQKYFDLPITQAAKKLNVGLTVLKRRCRELNIMRWPHRKIKSL 214 6799********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.575	155	226	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-24	167	214	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MLLSSLYFHS LIPKVSNFHS DFDVSLIPIF SQMDSVQLQV PKIEINPHGF DSLQYYQDPF 60 HENVSLEEHL PLDNLFEFNS IPLEWNQNQH PHMGFQGFED LGSWDFMLDN TDFTSPCDYV 120 VVDEKPVITM VDYFDYSNNP TSDLDEASRM ADWGSNGIYN KKSSAALELD EIQKYFDLPI 180 TQAAKKLNVG LTVLKRRCRE LNIMRWPHRK IKSLKALIEN VKEDSV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.2G308900.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007219091.2	1e-166	protein RKD4
TrEMBL	A0A251QP31	1e-167	A0A251QP31_PRUPE; Uncharacterized protein
STRING	XP_009352035.1	2e-66	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	9e-23	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Prupe.2G308900.2.p