PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G316600.1.p
Common NamePRUPE_ppa011221mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 220aa    MW: 25272.2 Da    PI: 6.8015
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G316600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.1e-193387256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        ++ ++f++eq+  Le+ Fe ++++  +++ + A++lgL+ rqV +WFqNrRa++k
  Prupe.2G316600.1.p 33 KNQRRFSDEQIGLLESIFEADSKLEPRRKVQVARELGLQPRQVAIWFQNRRARWK 87
                        56789*************************************************9 PP
2HD-ZIP_I/II122.12.7e-3934125293
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         ++rr+s+eq+ lLE+ Fe+++kLep+rKv++areLglqprqva+WFqnrRAR+k+kq+E+d+++L++ yd+l+++ e+L++e+++L  +++
  Prupe.2G316600.1.p  34 NQRRFSDEQIGLLESIFEADSKLEPRRKVQVARELGLQPRQVAIWFQNRRARWKSKQIEQDFRTLRADYDNLASRFESLKEEKQSLLMQMQ 124
                         68************************************************************************************99988 PP

         HD-ZIP_I/II  93 e 93 
                         +
  Prupe.2G316600.1.p 125 K 125
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-191788IPR009057Homeodomain-like
SuperFamilySSF466897.1E-192190IPR009057Homeodomain-like
PROSITE profilePS5007117.752989IPR001356Homeobox domain
SMARTSM003892.5E-183293IPR001356Homeobox domain
PfamPF000461.2E-163387IPR001356Homeobox domain
CDDcd000861.24E-153390No hitNo description
PRINTSPR000311.2E-56069IPR000047Helix-turn-helix motif
PROSITE patternPS0002706487IPR017970Homeobox, conserved site
PRINTSPR000311.2E-56985IPR000047Helix-turn-helix motif
PfamPF021834.0E-1589128IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MEKTECSEAE NFGSVTTSLE PQATAKRKKN KSKNQRRFSD EQIGLLESIF EADSKLEPRR  60
KVQVARELGL QPRQVAIWFQ NRRARWKSKQ IEQDFRTLRA DYDNLASRFE SLKEEKQSLL  120
MQMQKLNEVV GKPSQGLEGN IMADGSRLDE ELEPRGVIQS HKNNTSNDVG CHGDEIHELL  180
SVAHVDASSL SPQDWHRFDP SILFDPSRFT SSHWLNFWT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12536KRKKNKSKNQRR
28189RRARWKSKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G316600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1394970.0AF139497.1 Prunus armeniaca homeobox leucine zipper protein (HBLZP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007218369.11e-162homeobox-leucine zipper protein ATHB-12
TrEMBLM5XDH81e-161M5XDH8_PRUPE; Uncharacterized protein
STRINGEMJ195681e-162(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.16e-46homeobox 12