PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G329200.1.p
Common NamePRUPE_ppa022199mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRF
Protein Properties Length: 332aa    MW: 36227.1 Da    PI: 8.2296
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G329200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.56.5e-2588132145
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  Prupe.2G329200.1.p  88 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 132
                         79****************************************986 PP
2QLQ64.72.4e-222662137
                 QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                        s+FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iqk
  Prupe.2G329200.1.p 26 SPFTVSQWQELEHQALIFKYMMAGMPVPPDLVLPIQK 62
                        89*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.7E-132662IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.5762762IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.7E-162761IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.76288132IPR014977WRC domain
PfamPF088793.8E-2189131IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MNTCATGGGG GGGGGGGAAG MTGMRSPFTV SQWQELEHQA LIFKYMMAGM PVPPDLVLPI  60
QKSFESISQR FFHHPTMGYC SFYGKKVDPE PGRCRRTDGK KWRCSKDAYP DSKYCERHMH  120
RGRNRSRKPV ESQTMTQSSS TVTSLTVTAS SSGTGSFQNL PLNAFGNTQG TSSGTNQSHY  180
QIDSIPFGIP NKDYRYLQGL KPEIGEHSFL SDASGSNRGL QMDSPLDSTW PLMPSRVGSF  240
PASKSGDGSI LHHDYPQHSF FNNAFPSESV KQEGQSLRPF FDEWPKGRDS WSGLEDERSN  300
QTSFSTTQLS ISIPMTSSDI SATSSRSPHD S*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G329200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020413149.10.0growth-regulating factor 4 isoform X2
SwissprotQ6AWY42e-90GRF5_ORYSJ; Growth-regulating factor 5
TrEMBLA0A251QQB80.0A0A251QQB8_PRUPE; Uncharacterized protein
STRINGEMJ206880.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47812951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.19e-46growth-regulating factor 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]