PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G009400.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 214aa    MW: 23101.2 Da    PI: 10.3669
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G009400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.1e-211665255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Prupe.3G009400.1.p 16 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 65
                        59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.63E-311575No hitNo description
PROSITE profilePS5103223.1431673IPR001471AP2/ERF domain
SMARTSM003807.5E-381679IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-231674IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-321674IPR001471AP2/ERF domain
PRINTSPR003671.5E-111728IPR001471AP2/ERF domain
PfamPF008471.6E-141765IPR001471AP2/ERF domain
PRINTSPR003671.5E-113955IPR001471AP2/ERF domain
PRINTSPR007836.1E-13146168IPR000425Major intrinsic protein
SuperFamilySSF813385.63E-17152207IPR023271Aquaporin-like
Gene3DG3DSA:1.20.1080.106.3E-20153208IPR023271Aquaporin-like
PfamPF002301.3E-17153203IPR000425Major intrinsic protein
PRINTSPR007836.1E-13186206IPR000425Major intrinsic protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006810Biological Processtransport
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005215Molecular Functiontransporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MKQVFSSGSP PKPTKLYRGV RQRHWGKWVA EIRLPKNRTR LWLGTFDTAE EAALAYDKAA  60
YKLRGDFARL NFPHLRHNGS SVGGDFGEYK PLHSVDAKLQ AICEGLAETQ KQGKAAGKPS  120
KRSSAARAPA PPPEVKVETS SSPVMTDSDG SAGLATIPIT GTGINPARSF GPAVIFNNEK  180
AWDDQWIFWV GPFVGALAAA AYHQYILRAA GQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1z98_A5e-28154210211267aquaporin
1z98_M5e-28154210211267aquaporin
2b5f_A5e-28154210211267aquaporin
2b5f_B5e-28154210211267aquaporin
2b5f_C5e-28154210211267aquaporin
2b5f_D5e-28154210211267aquaporin
4ia4_A5e-28154210211267Aquaporin
4ia4_B5e-28154210211267Aquaporin
4ia4_C5e-28154210211267Aquaporin
4ia4_D5e-28154210211267Aquaporin
4jc6_A5e-28154210211267Aquaporin
4jc6_B5e-28154210211267Aquaporin
4jc6_C5e-28154210211267Aquaporin
4jc6_D5e-28154210211267Aquaporin
4jc6_H5e-28154210211267Aquaporin
4jc6_J5e-28154210211267Aquaporin
4jc6_L5e-28154210211267Aquaporin
4jc6_N5e-28154210211267Aquaporin
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.62785e-94fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G009400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3695560.0KT369556.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020414393.11e-157ethylene-responsive transcription factor RAP2-4
SwissprotQ8H1E48e-69RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A251PT821e-155A0A251PT82_PRUPE; Uncharacterized protein
STRINGEMJ227301e-107(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.17e-55related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]