PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G019900.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 190aa    MW: 20614.4 Da    PI: 9.8184
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G019900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.2e-2095144255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ++ GVr ++ +gr++AeIrdp++   rkr++lg+++taeeAa+ +++a++kl+g
  Prupe.3G019900.1.p  95 KFIGVRKRP-WGRYAAEIRDPTQ---RKRVWLGTYDTAEEAAAVYDRAALKLKG 144
                         789******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.7E-472188IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000183.71E-3095151No hitNo description
SMARTSM003805.8E-3495158IPR001471AP2/ERF domain
PfamPF008471.2E-1295144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-2895152IPR001471AP2/ERF domain
PROSITE profilePS5103221.86595152IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-2195153IPR016177DNA-binding domain
PRINTSPR003672.3E-896107IPR001471AP2/ERF domain
PRINTSPR003672.3E-8118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MTTTTTILTK PKMIHQNQNL PPNPTRLPPK RLVRIILADA DATDSSSDED SVVPGVKRHV  60
RKISRELSSP SNCSCHSKLS KRRNQPEPDP TSREKFIGVR KRPWGRYAAE IRDPTQRKRV  120
WLGTYDTAEE AAAVYDRAAL KLKGPHAVTN FTIPVIAEET VADEVVPAVG SSHVSEVGGE  180
GGAAGCVSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1996159670ATERF1
3gcc_A3e-1996159670ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G019900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020416096.11e-138pathogenesis-related genes transcriptional activator PTI6-like
SwissprotQ9SUE32e-34CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A251PTU11e-136A0A251PTU1_PRUPE; Uncharacterized protein
STRINGXP_008228057.11e-102(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-25cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]