PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G035200.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 233aa    MW: 26159.6 Da    PI: 9.62
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G035200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.17.1e-213381149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        krie+k +r+vtfskR++gi+ KA ELSvL +ae+a +++ss+gk++ +
  Prupe.3G035200.1.p 33 KRIEEKNKRHVTFSKRKKGIFNKAAELSVLSGAEIATMVVSSNGKVFCF 81
                        79*******************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.1E-292584IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.1752585IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.19E-2426100IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-172747IPR002100Transcription factor, MADS-box
PfamPF003191.2E-193481IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-174762IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-176283IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MAKTKIPKSE ISDNNNTSDG KKRSKGRRRI EIKRIEEKNK RHVTFSKRKK GIFNKAAELS  60
VLSGAEIATM VVSSNGKVFC FGTPNYDAVI NCYLGHHTAP LAAAGQPDHR ALLHGKTMRS  120
SNKQVENYVE ATRHLEAEKI SIKGEENNNN INFAINNNNY YYNSDYEGRE GGCGYAWWER  180
PIPIGMMSSL EELEEYKAAL YKLKHNVEVR TNQMIMGSAP SNYYSSLLVM GD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A2e-209108298PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B2e-209108298PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11925GKKRSKG
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G035200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020416701.11e-173agamous-like MADS-box protein AGL62
RefseqXP_020416702.11e-173agamous-like MADS-box protein AGL62
TrEMBLA0A251PUM31e-172A0A251PUM3_PRUPE; Uncharacterized protein
STRINGEMJ190421e-161(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1658149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-14AGAMOUS-like 62