PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G054400.1.p
Common NamePRUPE_ppa015446mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 443aa    MW: 48727.1 Da    PI: 6.8318
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G054400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.3e-08346386954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r+RR+ri +++  L++l+P       +K++ a++L +A +Y+k L
  Prupe.3G054400.1.p 346 ARQRRERISERIRVLQRLVPGG-----GKMDTASMLDEAANYLKFL 386
                         69******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.015337386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-12343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-13343400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-12345399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-5346386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDGSDWDGSY ITNTSTLLWN NHQVHDLEES LLVSSSGPSA FIPIQEFQKV QTSHAIMNSN  60
TERASKSAQI VHQQNPCLLD SVHAMPTLRA DQLCQAPLMI NKPNYNLMGS LSTGIFMAAD  120
HYGDTGKHVQ TQVIHGLQDH GKAKPATTRS VESLDCLLSG TNSNTDTSVE DDDGISMLFS  180
DCRRNLWNFG AGNNSAISSG ESENNETVVS QSSSDLYVQN QGNKNSTKRS HDQSELNGAN  240
HSHFGLLQTD SSTTEGGFRL ISENPPNPKK PRSDKRPSSS NINFQQPSSS VSASSIEEPD  300
PEVIAQMKEM IYRAAAFRPV NLGMDMVERP KRKNVKISSD PQTVAARQRR ERISERIRVL  360
QRLVPGGGKM DTASMLDEAA NYLKFLRSQV KALENLGQKI ESMSNSNIPP ASFAFSFNPS  420
FPMQTHHHVP LHNPNHIHQP HS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1346351RQRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G054400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020416133.10.0transcription factor bHLH87
SwissprotQ8S3D23e-87BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A251PX200.0A0A251PX20_PRUPE; Uncharacterized protein
STRINGEMJ181630.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.14e-66bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]