PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.3G064500.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 335aa MW: 36747.1 Da PI: 7.5003

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.3G064500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.9	0.00043	199	237	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Prupe.3G064500.1.p 199 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 237 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.331	187	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-7	197	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.05E-5	197	241	No hit	No description
SuperFamily	SSF47459	4.45E-10	197	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MMAGNPNWWS SMHPPSLFPS QYVQLGSSNS LPLNSLPEHN LEPPQSWSQL LLGGLSSQED 60 GFGTLSHFQP KGRLENWEED QILIPQYPRA PVVDFIKQES NSQNSINLCN NPHGDEEFQL 120 APSSRPVWSP VQIMPVSSPR SCVTSLSNNN ILDFTYNKAD NKRNQHAVHS SECNSTATGG 180 MCKKARVQPS PSQPPLKVRK EKLGDRITAL HQLVSPFGKT DTASVLLEAI GYIRFLQGQI 240 EALSSPYLGN ASKNMRNQQS VQGERNCVFP EDPGQLLNDN CLKRKGAPNQ HPSSQDKAKD 300 LRSKGLCLVP VSCTQHVGSD NGADYWAPAY GSGF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.3G064500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020416587.1	0.0	transcription factor bHLH68 isoform X1
Swissprot	Q8S3D1	5e-78	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A251PW95	0.0	A0A251PW95_PRUPE; Uncharacterized protein
STRING	XP_008228480.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1223	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	4e-80	bHLH family protein

Link Out ? help Back to Top
Phytozome	Prupe.3G064500.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]