PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G067200.1.p
Common NamePRUPE_ppa001840mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 758aa    MW: 84381.5 Da    PI: 6.0936
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G067200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.12.3e-21104159156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Prupe.3G067200.1.p 104 RKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 159
                         7999************************************************9877 PP
2START233.55.8e-732734962206
                         HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
               START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                         + ++a++el k+a+a+ep+Wv+s+    e++n+de++++f  +        +s+ea+r++gvv+ ++++lv++++d++ qW+e+++    k
  Prupe.3G067200.1.p 273 IVNQAMEELKKMATAGEPLWVRSVetgrEILNYDEYIKEFNIEIPgngrpkRSIEASRETGVVFVDMPRLVQSFMDVN-QWKEMFPcmisK 362
                         56789***********************************9988899*******************************.************ PP

                         EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS
               START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162
                         a+t++vis+g      ga+qlm+aelq+l+plvp R+++fvR+++ql+a++w+ivdvS+d  +++  ++s+v+++++pSg++ie+ksngh+
  Prupe.3G067200.1.p 363 AATVDVISNGegdnrnGAVQLMFAELQMLTPLVPtREVYFVRCCKQLSAEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHC 452
                         ****************************************************************98.9*********************** PP

                         EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         kv+wveh ++++++++ ++r +v+sgla+ga++wvatlq qce+
  Prupe.3G067200.1.p 453 KVIWVEHLECQKSTIQTMYRTIVNSGLAFGARHWVATLQLQCER 496
                         ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-2390155IPR009057Homeodomain-like
SuperFamilySSF466896.84E-2193162IPR009057Homeodomain-like
PROSITE profilePS5007118.269101161IPR001356Homeobox domain
SMARTSM003891.5E-18103165IPR001356Homeobox domain
PfamPF000461.3E-18104159IPR001356Homeobox domain
CDDcd000866.52E-17108159No hitNo description
PROSITE patternPS000270136159IPR017970Homeobox, conserved site
PROSITE profilePS5084840.212263499IPR002913START domain
SuperFamilySSF559611.35E-35265496No hitNo description
CDDcd088759.33E-114267495No hitNo description
Gene3DG3DSA:3.30.530.205.6E-6269490IPR023393START-like domain
SMARTSM002341.3E-74272496IPR002913START domain
PfamPF018522.8E-59273496IPR002913START domain
SuperFamilySSF559615.08E-15526745No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MGVDMSNNPP TSRTKDFFAS PALSLSLAGI FRDAGETAAA SREVEEGDEG SGGAGSVRRR  60
EDTAEISSEN SGPARSRSED EFDGEGEHDE DDGDGDNKNK KKKRKKYHRH TTEQIREMEA  120
LFKESPHPDE KQRQQLSKQL GLAPRQVKFW FQNRRTQIKA IQERHENSLL KGEMEKLRDE  180
NKAMREQINK SCCPNCGTAT TSRDASLTTE EQQLRIENAR LKSEVEKLRA ALVKNPPGTS  240
SPSCSSGHDQ ENRSSLDFYT GIFGLEKSRI MEIVNQAMEE LKKMATAGEP LWVRSVETGR  300
EILNYDEYIK EFNIEIPGNG RPKRSIEASR ETGVVFVDMP RLVQSFMDVN QWKEMFPCMI  360
SKAATVDVIS NGEGDNRNGA VQLMFAELQM LTPLVPTREV YFVRCCKQLS AEQWAIVDVS  420
IDKVEDNIDA SLVKCRKRPS GCIIEDKSNG HCKVIWVEHL ECQKSTIQTM YRTIVNSGLA  480
FGARHWVATL QLQCERLVFF MATNVPMKDS TGVATLAGRK SILKLAQRMT WSFCRAIGAS  540
SYHTWTKISS KTGDDIRIAS RKNLNDPGEP LGVILCAVSS VWLPVCPYVL FDFLRDETRR  600
NEWDIMINGG PAQTIANLSK GQDRGNAVTI QTMKSKENSM WILQDTCINS YESMVVYAPV  660
DITGMQSVMT GCDASNIAIL PSGFSILPDG LESRPMVITS KQEDRSSEGG TLLTAAFQVL  720
TNSSPTAKLT MESVESVNTL ISCTLRNIKT SLQCEDG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199104KKKKRK
299105KKKKRKK
3101105KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.150410.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing trichomes.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G067200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007217160.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLM5WXG00.0M5WXG0_PRUPE; Uncharacterized protein
STRINGEMJ183590.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]