PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.3G071200.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 137aa MW: 15319.6 Da PI: 8.4945

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.3G071200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	82.9	4.9e-26	13	85	1	73
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPv 73 aCa+C ++rrkC + C +apyfpa++ ++f+n+hk+F +sn++k+++ + +++r++a++sl e++ar +dP Prupe.3G071200.1.p 13 ACASCNHQRRKCDETCEMAPYFPASRYNEFQNAHKIFCVSNIQKIMAMAAPDQRQAAAESLPTEGNARKNDPD 85 7***********************************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.04	12	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.0E-23	13	84	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MENRDQGAAQ NHACASCNHQ RRKCDETCEM APYFPASRYN EFQNAHKIFC VSNIQKIMAM 60 AAPDQRQAAA ESLPTEGNAR KNDPDLLLID TISCNEAIKL IGSNIKLYKL PLVSLRQLQA 120 PMLMPLRQSD RRCKPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-15	14	93	12	91	LOB family transfactor Ramosa2.1
5ly0_B	1e-15	14	93	12	91	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.3G071200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021804831.1	5e-51	LOB domain-containing protein 22-like
Refseq	XP_021818952.1	1e-51	LOB domain-containing protein 22-like
TrEMBL	A0A251PWN4	3e-96	A0A251PWN4_PRUPE; Uncharacterized protein
STRING	EMJ17480	1e-56	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14432	11	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	8e-19	LOB domain-containing protein 2

Link Out ? help Back to Top
Phytozome	Prupe.3G071200.1.p