PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G080200.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 254aa    MW: 28911.6 Da    PI: 9.0088
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G080200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.52e-077296126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        +kt+lC++f   G C+yG  C+FaHg
  Prupe.3G080200.1.p 72 FKTRLCNNFKM-GNCHYGQGCCFAHG 96
                        79*********.*************8 PP
2zf-CCCH201.2e-06130150525
                         --SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                          Cr f+ +G C+yGd+C++ H
  Prupe.3G080200.1.p 130 VCRLFFNGGKCSYGDKCRYPH 150
                         6*****************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.23E-769102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-1269102IPR000571Zinc finger, CCCH-type
SMARTSM003560.00427197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9297198IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-57296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6123152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638125154IPR000571Zinc finger, CCCH-type
SMARTSM003560.31126152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5129151IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-4130151IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSDSGPTCQF FAPYLESGDN RHQLKPEFPN ADKDFKDHSD IESHPFKKRK TSEVVLISTI  60
PMAQNKVLHC NFKTRLCNNF KMGNCHYGQG CCFAHGISDL RKTWRHWQGL ETEEGFKART  120
YDHRRTSNDV CRLFFNGGKC SYGDKCRYPH HVTPESIREK SAISISTTGA HMGGSGQFYS  180
KRSLVESRSV QNSRTSSTSM SKRRMGIGAT YHKQVQGMEC NFKWNELEKM SRIYADWIED  240
IPLVHGSSSK AEC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.99631e-149fruit| shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G080200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020416528.10.0zinc finger CCCH domain-containing protein 28 isoform X1
TrEMBLA0A251PX340.0A0A251PX34_PRUPE; Uncharacterized protein
STRINGXP_008228654.11e-177(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15275712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-10C3H family protein