PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G083300.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 124aa    MW: 14211 Da    PI: 7.844
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G083300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.9e-087296126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        +kt+lC++f   G C+yG  C+FaHg
  Prupe.3G083300.1.p 72 FKTRLCNNFKM-GNCHYGQGCCFAHG 96
                        79*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.83E-769102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-1269102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9297198IPR000571Zinc finger, CCCH-type
SMARTSM003560.00427197IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-57296IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MSDSGPTCQF FAPYLESGDN RHQLKPEFPN ADKDFKDHSD IESHPFNKPK TSEVVLISTI  60
PMAQNKMLHC NFKTRLCNNF KMGNCHYGQG CCFAHGISDL RKTWRNWQGL ETEEGFKART  120
YNF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.99639e-73fruit| shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G083300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020416528.12e-85zinc finger CCCH domain-containing protein 28 isoform X1
TrEMBLA0A251PX924e-89A0A251PX92_PRUPE; Uncharacterized protein
STRINGXP_008228654.19e-79(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15275712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.16e-10C3H family protein