PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G111300.1.p
Common NamePRUPE_ppb021823mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 67aa    MW: 7496.76 Da    PI: 9.2734
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G111300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF694.4e-222566142
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                        k+ien++nrqv f+k rng+lK A+ELS LCdaeva+i+fss
  Prupe.3G111300.1.p 25 KQIENTTNRQVAFCKKRNGLLKMAYELSLLCDAEVALIVFSS 66
                        78**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-161766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.3151766IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-231939IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-211966IPR002100Transcription factor, MADS-box
PfamPF003198.8E-202765IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-233954IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-235466IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
MAYENKSMSL DSPQRKLGWG KIEVKQIENT TNRQVAFCKK RNGLLKMAYE LSLLCDAEVA  60
LIVFSS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.17104e-89fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flower. Preferentially expressed in stamen and carpel and weakly in petal. Undetected in leaves and roots.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G111300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7059729e-86AY705972.1 Prunus persica MADS4 mRNA, complete cds.
GenBankEU0723549e-86EU072354.1 Prunus persica AGAMOUS-like protein (AG) gene, complete cds.
GenBankFJ1842759e-86FJ184275.1 Prunus persica MADS-box transcription factor (FAR) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007211925.17e-36floral homeotic protein AGAMOUS isoform X2
RefseqXP_008225406.13e-35PREDICTED: floral homeotic protein AGAMOUS isoform X3
RefseqXP_008225407.18e-36PREDICTED: floral homeotic protein AGAMOUS isoform X1
RefseqXP_008225408.17e-36PREDICTED: floral homeotic protein AGAMOUS isoform X2
RefseqXP_008225409.17e-36PREDICTED: floral homeotic protein AGAMOUS isoform X4
RefseqXP_016648725.18e-36PREDICTED: floral homeotic protein AGAMOUS isoform X1
RefseqXP_020417370.18e-36floral homeotic protein AGAMOUS isoform X1
RefseqXP_020417372.17e-36floral homeotic protein AGAMOUS isoform X3
RefseqXP_021825648.18e-36floral homeotic protein AGAMOUS isoform X1
RefseqXP_021825649.17e-36floral homeotic protein AGAMOUS isoform X2
RefseqXP_021825651.17e-36floral homeotic protein AGAMOUS isoform X2
RefseqXP_021825652.17e-36floral homeotic protein AGAMOUS isoform X3
RefseqXP_021825653.18e-36floral homeotic protein AGAMOUS isoform X4
SwissprotQ408724e-29AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLM5WVL12e-41M5WVL1_PRUPE; Uncharacterized protein
STRINGEMJ178423e-42(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.12e-29MIKC_MADS family protein