PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G133500.1.p
Common NamePRUPE_ppa015121mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 430aa    MW: 47178.2 Da    PI: 7.4234
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G133500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.89e-09140160526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C +++r G C++Gd+C FaHg
  Prupe.3G133500.1.p 140 VCADYRR-GSCSRGDSCEFAHG 160
                         799****.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.3E-5134164IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5135161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375136162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-6139162IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-7140160IPR000571Zinc finger, CCCH-type
SMARTSM003562.6170193IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MTSVCAEQQH KFHPSHQLLS SKKSLHNTTI DIPPRKLLTR RTQTQDFPSS SPDMYSPRFS  60
TADEALLRKF LPYNAAADDS DEDDAHSSDP YSSDHFRMFE FKVRRCTRSR SHDWTDCPFA  120
HPGEKARRRD PRRYHYSGTV CADYRRGSCS RGDSCEFAHG VFECWLHPAR YRTEACKDGK  180
QCKRKVCFFA HTPHQLRVLP VQSSADHTAA ALSPTPKKKY GHLSNSVGSP GSNQHCCLFC  240
HSAVTTSSPT STLLGMSHLS PPLSPAGNHC SSVNGFHNSP VMSRCSGLGL GLDQMHASTG  300
GMMSYKDVLA ELVNSLEAVK FSEAAASSPI NPNAPRWVDV SFNSTDDVDQ QQQFILSPST  360
PSPSRPFGGR GINFSDGDEN SSSRKSSLLG FDDNYYKLNN INDEIIDGGG GSGSGSSDPD  420
LGWVNELLM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G133500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007198967.20.0zinc finger CCCH domain-containing protein 2
TrEMBLM5VHD10.0M5VHD1_PRUPE; Uncharacterized protein
STRINGEMJ001660.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.12e-83C3H family protein