PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G149200.1.p
Common NamePRUPE_ppa018479mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 312aa    MW: 34717.5 Da    PI: 7.1256
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G149200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.75.1e-15231255226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ktelC+ + +tGtC+yG++C+FaHg
  Prupe.3G149200.1.p 231 KTELCNKWEETGTCPYGENCQFAHG 255
                         8***********************9 PP
2zf-CCCH25.32.6e-08268293126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykt lCr  a++G C+yG rC+F H+
  Prupe.3G149200.1.p 268 YKTQLCRMVAAGGKCPYGHRCHFRHS 293
                         9**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.46E-11226261IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-18226262IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-8229256IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.572229257IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-12231255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-13263296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-9263298IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5267294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.211267295IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5268293IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
METNAAFPTS PDSSTRDFGS DFASMYRSIF PPKFTLPSSL SLTPSTRSSF SDSDSNSDDH  60
HHNHNATSQR LTQAQLILES QELRDHYDLC SAHLRDLADE LDSLRLENSH LRSANSDLVK  120
LLSSQAAFQS FLLSSSSSSA YQSPSTPSFL DDFRRLGFGS LGPRDGVVSD EASDISPTSV  180
IERNRFDVVD RVALPKSISV RSSTRPRVPS QLFSGSPTQS QVKVFNQGMV KTELCNKWEE  240
TGTCPYGENC QFAHGVRELR PVMRHPRYKT QLCRMVAAGG KCPYGHRCHF RHSLTEQERL  300
QLAMAAETRF D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-24231296570Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G149200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007216918.10.0zinc finger CCCH domain-containing protein 14 isoform X1
TrEMBLM5WWD30.0M5WWD3_PRUPE; Uncharacterized protein
STRINGEMJ181170.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.23e-48C3H family protein