PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G149200.2.p
Common NamePRUPE_ppa018479mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 311aa    MW: 34589.4 Da    PI: 7.1256
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G149200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.75.1e-15230254226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ktelC+ + +tGtC+yG++C+FaHg
  Prupe.3G149200.2.p 230 KTELCNKWEETGTCPYGENCQFAHG 254
                         8***********************9 PP
2zf-CCCH25.32.6e-08267292126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykt lCr  a++G C+yG rC+F H+
  Prupe.3G149200.2.p 267 YKTQLCRMVAAGGKCPYGHRCHFRHS 292
                         9**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.9E-18225261IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-11225260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.572228256IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-8228255IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-12230254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-9262297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-13262295IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5266293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.211266294IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5267292IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
METNAAFPTS PDSSTRDFGS DFASMYRSIF PPKFTLPSSL SLTPSTRSSF SDSDSNSDDH  60
HHNHNATSQR LTQAQLILES QELRDHYDLC SAHLRDLADE LDSLRLENSH LRSANSDLVK  120
LLSSQAAFQS FLLSSSSSSA YQSPSTPSFL DDFRRLGFGS LGPRDGVVSD EASDISPTSV  180
IERNRFDVVD RVALPKSISV RSSTRPRVPS QLFSGSPTSQ VKVFNQGMVK TELCNKWEET  240
GTCPYGENCQ FAHGVRELRP VMRHPRYKTQ LCRMVAAGGK CPYGHRCHFR HSLTEQERLQ  300
LAMAAETRFD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-24230295570Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G149200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020414649.10.0zinc finger CCCH domain-containing protein 14 isoform X2
TrEMBLA0A251Q0A50.0A0A251Q0A5_PRUPE; Uncharacterized protein
STRINGEMJ181170.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.16e-48C3H family protein