PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G149300.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-YC
Protein Properties Length: 212aa    MW: 24527.6 Da    PI: 5.3379
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G149300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC121.53.6e-3898197297
               NF-YC   2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         ++ fw++q   i+++t  k +helPlar+k+++k+d +vk++s+e+Pvl+skacelfi+eltlrswlh+e +krrtl+++d a a+ + + 
  Prupe.3G149300.1.p  98 IEIFWNQQlfeIQNTTVAKaHHELPLARVKRVMKSDGQVKKVSSETPVLFSKACELFIMELTLRSWLHTERSKRRTLQHCDTARAIMQDEL 188
                         578*****87655555555699********************************************************************* PP

               NF-YC  89 fdflvdivp 97 
                           flv  vp
  Prupe.3G149300.1.p 189 LHFLVHAVP 197
                         *****9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.86E-2479192IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.5E-29114183IPR009072Histone-fold
PfamPF008086.3E-17120182IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDIPMGNLTS HENQVTELET FEAFETRNEL ARQFRPVLMD VNHSINITPS SNTSPEMHGF  60
MSTGSFELRN YYSHPSSREE ADQEAKQSSF TELQKEEIEI FWNQQLFEIQ NTTVAKAHHE  120
LPLARVKRVM KSDGQVKKVS SETPVLFSKA CELFIMELTL RSWLHTERSK RRTLQHCDTA  180
RAIMQDELLH FLVHAVPPLN SIARDYFEDD E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-29105197394NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G149300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020416319.11e-113nuclear transcription factor Y subunit C-2 isoform X2
TrEMBLA0A251Q0B01e-156A0A251Q0B0_PRUPE; Uncharacterized protein
STRINGEMJ190238e-86(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143991518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-34nuclear factor Y, subunit C2